Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9670 | 3' | -55.6 | NC_002577.1 | + | 154023 | 1.1 | 0.002665 |
Target: 5'- gCAAGACAGCGCACAAGGAUCCCCGCCc -3' miRNA: 3'- -GUUCUGUCGCGUGUUCCUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 122799 | 0.78 | 0.342423 |
Target: 5'- uCGGGACGGCGCGCGAucgcuUCCCgGCCg -3' miRNA: 3'- -GUUCUGUCGCGUGUUccu--AGGGgCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 10815 | 0.78 | 0.342423 |
Target: 5'- uCGGGACGGCGCGCGAucgcuUCCCgGCCg -3' miRNA: 3'- -GUUCUGUCGCGUGUUccu--AGGGgCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 10960 | 0.76 | 0.398171 |
Target: 5'- -cGGACGGCGgGCcggccAGGGAacgacggUCCCCGCCg -3' miRNA: 3'- guUCUGUCGCgUG-----UUCCU-------AGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 160914 | 0.75 | 0.460333 |
Target: 5'- gCGAGGgAGUGCucgccacGCGAGcGAUCUCCGCCa -3' miRNA: 3'- -GUUCUgUCGCG-------UGUUC-CUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 136424 | 0.75 | 0.460333 |
Target: 5'- gCGAGGgAGUGCucgccacGCGAGcGAUCUCCGCCa -3' miRNA: 3'- -GUUCUgUCGCG-------UGUUC-CUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 156149 | 0.75 | 0.470566 |
Target: 5'- --cGACGGCGCGCAucaGGGGUCuCCUGgCg -3' miRNA: 3'- guuCUGUCGCGUGU---UCCUAG-GGGCgG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 141189 | 0.75 | 0.470566 |
Target: 5'- --cGACGGCGCGCAucaGGGGUCuCCUGgCg -3' miRNA: 3'- guuCUGUCGCGUGU---UCCUAG-GGGCgG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 122654 | 0.75 | 0.498078 |
Target: 5'- -cGGACGGCGgGCcGGccagcggaacgacGGUCCCCGCCg -3' miRNA: 3'- guUCUGUCGCgUGuUC-------------CUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 104147 | 0.75 | 0.49904 |
Target: 5'- gAAGGCGGCGCuauccguaagGCgAAGGG-CCCCGCUg -3' miRNA: 3'- gUUCUGUCGCG----------UG-UUCCUaGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 86862 | 0.74 | 0.547083 |
Target: 5'- gAGGACuauguaaAGUcuGCACGAGcGAUCCUCGCCg -3' miRNA: 3'- gUUCUG-------UCG--CGUGUUC-CUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 46793 | 0.74 | 0.54808 |
Target: 5'- cCAuGAUuGCGCGCGAGGggCCCCauccuGCCg -3' miRNA: 3'- -GUuCUGuCGCGUGUUCCuaGGGG-----CGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 132836 | 0.73 | 0.568132 |
Target: 5'- gAGGACcgggAGCGCACGAcgauGGGcUCCCGCCu -3' miRNA: 3'- gUUCUG----UCGCGUGUU----CCUaGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 778 | 0.73 | 0.568132 |
Target: 5'- gAGGACcgggAGCGCACGAcgauGGGcUCCCGCCu -3' miRNA: 3'- gUUCUG----UCGCGUGUU----CCUaGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 45805 | 0.73 | 0.598531 |
Target: 5'- gGAGAU-GUGCGC--GGGUUCCCGCCa -3' miRNA: 3'- gUUCUGuCGCGUGuuCCUAGGGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 138327 | 0.72 | 0.618931 |
Target: 5'- --uGGCAGCGCAuUGAGGcgCuCCUGCCu -3' miRNA: 3'- guuCUGUCGCGU-GUUCCuaG-GGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 159011 | 0.72 | 0.618931 |
Target: 5'- --uGGCAGCGCAuUGAGGcgCuCCUGCCu -3' miRNA: 3'- guuCUGUCGCGU-GUUCCuaG-GGGCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 33301 | 0.7 | 0.749555 |
Target: 5'- ---cGCAGCGCACGcGGAaUCCUuaCGCCu -3' miRNA: 3'- guucUGUCGCGUGUuCCU-AGGG--GCGG- -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 80548 | 0.7 | 0.7534 |
Target: 5'- uCAAGAUAGUacucgcuauauuaagGCACGcGGAUgCCCGCg -3' miRNA: 3'- -GUUCUGUCG---------------CGUGUuCCUAgGGGCGg -5' |
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9670 | 3' | -55.6 | NC_002577.1 | + | 162579 | 0.7 | 0.759136 |
Target: 5'- gGAGcGCAGgGCGaAAGGA-CCCCGCUu -3' miRNA: 3'- gUUC-UGUCgCGUgUUCCUaGGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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