miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9670 3' -55.6 NC_002577.1 + 134947 0.67 0.904375
Target:  5'- --cGGCGGCGaaaGC-GGGGUCCUuuCGCCc -3'
miRNA:   3'- guuCUGUCGCg--UGuUCCUAGGG--GCGG- -5'
9670 3' -55.6 NC_002577.1 + 136840 0.67 0.904375
Target:  5'- --cGACcccGCGCGCAuuauGGAcgguUCCCUGUCg -3'
miRNA:   3'- guuCUGu--CGCGUGUu---CCU----AGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 4931 0.67 0.900591
Target:  5'- -cGGGgAGCgGCACGGGGAaucaauucgucuuucUCUCCGCa -3'
miRNA:   3'- guUCUgUCG-CGUGUUCCU---------------AGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 128683 0.67 0.900591
Target:  5'- -cGGGgAGCgGCACGGGGAaucaauucgucuuucUCUCCGCa -3'
miRNA:   3'- guUCUgUCG-CGUGUUCCU---------------AGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 9261 0.67 0.898022
Target:  5'- aCGAGACcGCGUGCGAGcGGU-CUCGUCg -3'
miRNA:   3'- -GUUCUGuCGCGUGUUC-CUAgGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 124353 0.67 0.898022
Target:  5'- aCGAGACcGCGUGCGAGcGGU-CUCGUCg -3'
miRNA:   3'- -GUUCUGuCGCGUGUUC-CUAgGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 33105 0.67 0.898022
Target:  5'- gAGGGCAG-GCGUAAGGAUUCCgCGUg -3'
miRNA:   3'- gUUCUGUCgCGUGUUCCUAGGG-GCGg -5'
9670 3' -55.6 NC_002577.1 + 141088 0.67 0.884627
Target:  5'- aGGGGCucguGCGCcgGCAAGGcUgCCCGCg -3'
miRNA:   3'- gUUCUGu---CGCG--UGUUCCuAgGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 4599 0.67 0.884627
Target:  5'- ---cGCGGCGCGCGAcGAcgCCgCGCCg -3'
miRNA:   3'- guucUGUCGCGUGUUcCUa-GGgGCGG- -5'
9670 3' -55.6 NC_002577.1 + 130342 0.67 0.884627
Target:  5'- aAAGACGGCGCu---GGG-CUCCGUCc -3'
miRNA:   3'- gUUCUGUCGCGuguuCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 156250 0.67 0.884627
Target:  5'- aGGGGCucguGCGCcgGCAAGGcUgCCCGCg -3'
miRNA:   3'- gUUCUGu---CGCG--UGUUCCuAgGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 73406 0.67 0.884627
Target:  5'- gAAGACGGCauaACGAGGuuaucgugCCCCGUg -3'
miRNA:   3'- gUUCUGUCGcg-UGUUCCua------GGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 129015 0.67 0.884627
Target:  5'- ---cGCGGCGCGCGAcGAcgCCgCGCCg -3'
miRNA:   3'- guucUGUCGCGUGUUcCUa-GGgGCGG- -5'
9670 3' -55.6 NC_002577.1 + 160382 0.67 0.877593
Target:  5'- -cGGACAG-GCGCc-GGAcCUCCGCCu -3'
miRNA:   3'- guUCUGUCgCGUGuuCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 163205 0.67 0.877593
Target:  5'- gCGAG-CAuGCGCGCGGcGGAcCCUgGCCa -3'
miRNA:   3'- -GUUCuGU-CGCGUGUU-CCUaGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 136956 0.67 0.877593
Target:  5'- -cGGACAG-GCGCc-GGAcCUCCGCCu -3'
miRNA:   3'- guUCUGUCgCGUGuuCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 134123 0.67 0.877593
Target:  5'- gCGAG-CAuGCGCGCGGcGGAcCCUgGCCa -3'
miRNA:   3'- -GUUCuGU-CGCGUGUU-CCUaGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 140216 0.68 0.862118
Target:  5'- gAAGcCcGCGCcccugguACGGGGGcCCCCGCCc -3'
miRNA:   3'- gUUCuGuCGCG-------UGUUCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 157122 0.68 0.862118
Target:  5'- gAAGcCcGCGCcccugguACGGGGGcCCCCGCCc -3'
miRNA:   3'- gUUCuGuCGCG-------UGUUCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 116919 0.68 0.855203
Target:  5'- gGGGugAGC-CACAuuGGGAagCCCGUCu -3'
miRNA:   3'- gUUCugUCGcGUGU--UCCUagGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.