miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9670 3' -55.6 NC_002577.1 + 778 0.73 0.568132
Target:  5'- gAGGACcgggAGCGCACGAcgauGGGcUCCCGCCu -3'
miRNA:   3'- gUUCUG----UCGCGUGUU----CCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 3272 0.67 0.904375
Target:  5'- aAGGACGGCGCu---GGG-CUCCGUCc -3'
miRNA:   3'- gUUCUGUCGCGuguuCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 4293 0.66 0.927433
Target:  5'- gUAAGACGGC-C-CAGGacgaagucccGcgCCCCGCCg -3'
miRNA:   3'- -GUUCUGUCGcGuGUUC----------CuaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 4599 0.67 0.884627
Target:  5'- ---cGCGGCGCGCGAcGAcgCCgCGCCg -3'
miRNA:   3'- guucUGUCGCGUGUUcCUa-GGgGCGG- -5'
9670 3' -55.6 NC_002577.1 + 4836 0.69 0.787172
Target:  5'- uCAAGuACuGCGCGCAAGGAccgaggcggcguUCCaaaCGUCg -3'
miRNA:   3'- -GUUC-UGuCGCGUGUUCCU------------AGGg--GCGG- -5'
9670 3' -55.6 NC_002577.1 + 4931 0.67 0.900591
Target:  5'- -cGGGgAGCgGCACGGGGAaucaauucgucuuucUCUCCGCa -3'
miRNA:   3'- guUCUgUCG-CGUGUUCCU---------------AGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 7661 0.66 0.910494
Target:  5'- aCGGGGCGcucaaCGCACAGGGGauaggaagaauuUCCCCucgGCCc -3'
miRNA:   3'- -GUUCUGUc----GCGUGUUCCU------------AGGGG---CGG- -5'
9670 3' -55.6 NC_002577.1 + 9171 0.66 0.910494
Target:  5'- --cGAUGGCGCggGCGGGGGagUCCGUCg -3'
miRNA:   3'- guuCUGUCGCG--UGUUCCUagGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 9261 0.67 0.898022
Target:  5'- aCGAGACcGCGUGCGAGcGGU-CUCGUCg -3'
miRNA:   3'- -GUUCUGuCGCGUGUUC-CUAgGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 10815 0.78 0.342423
Target:  5'- uCGGGACGGCGCGCGAucgcuUCCCgGCCg -3'
miRNA:   3'- -GUUCUGUCGCGUGUUccu--AGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 10960 0.76 0.398171
Target:  5'- -cGGACGGCGgGCcggccAGGGAacgacggUCCCCGCCg -3'
miRNA:   3'- guUCUGUCGCgUG-----UUCCU-------AGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 23964 0.66 0.932603
Target:  5'- gAGGAaacCGGCGgACAuuuauuGGAUgCCUCGCCc -3'
miRNA:   3'- gUUCU---GUCGCgUGUu-----CCUA-GGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 26079 0.67 0.904375
Target:  5'- gCGGGACAGCuccaaaaGCAGGcGUCUCCGCg -3'
miRNA:   3'- -GUUCUGUCGcg-----UGUUCcUAGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 33105 0.67 0.898022
Target:  5'- gAGGGCAG-GCGUAAGGAUUCCgCGUg -3'
miRNA:   3'- gUUCUGUCgCGUGUUCCUAGGG-GCGg -5'
9670 3' -55.6 NC_002577.1 + 33301 0.7 0.749555
Target:  5'- ---cGCAGCGCACGcGGAaUCCUuaCGCCu -3'
miRNA:   3'- guucUGUCGCGUGUuCCU-AGGG--GCGG- -5'
9670 3' -55.6 NC_002577.1 + 43974 0.68 0.83926
Target:  5'- cCGAG-CAGCGUACGcGcGuUCCCgGCCa -3'
miRNA:   3'- -GUUCuGUCGCGUGUuC-CuAGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 45805 0.73 0.598531
Target:  5'- gGAGAU-GUGCGC--GGGUUCCCGCCa -3'
miRNA:   3'- gUUCUGuCGCGUGuuCCUAGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 46793 0.74 0.54808
Target:  5'- cCAuGAUuGCGCGCGAGGggCCCCauccuGCCg -3'
miRNA:   3'- -GUuCUGuCGCGUGUUCCuaGGGG-----CGG- -5'
9670 3' -55.6 NC_002577.1 + 48482 0.68 0.83926
Target:  5'- -cAGACGGCGCAUGAG--UCgCCGCg -3'
miRNA:   3'- guUCUGUCGCGUGUUCcuAGgGGCGg -5'
9670 3' -55.6 NC_002577.1 + 48488 0.69 0.781657
Target:  5'- gGAGGCAGCGCccauuucauuccucuACGAaGcaAUUCCCGCCg -3'
miRNA:   3'- gUUCUGUCGCG---------------UGUUcC--UAGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.