miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9670 3' -55.6 NC_002577.1 + 10815 0.78 0.342423
Target:  5'- uCGGGACGGCGCGCGAucgcuUCCCgGCCg -3'
miRNA:   3'- -GUUCUGUCGCGUGUUccu--AGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 163205 0.67 0.877593
Target:  5'- gCGAG-CAuGCGCGCGGcGGAcCCUgGCCa -3'
miRNA:   3'- -GUUCuGU-CGCGUGUU-CCUaGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 4599 0.67 0.884627
Target:  5'- ---cGCGGCGCGCGAcGAcgCCgCGCCg -3'
miRNA:   3'- guucUGUCGCGUGUUcCUa-GGgGCGG- -5'
9670 3' -55.6 NC_002577.1 + 115625 0.66 0.932603
Target:  5'- -uGGAgAGCGC-CGAGGAaaCCCUGgCa -3'
miRNA:   3'- guUCUgUCGCGuGUUCCUa-GGGGCgG- -5'
9670 3' -55.6 NC_002577.1 + 778 0.73 0.568132
Target:  5'- gAGGACcgggAGCGCACGAcgauGGGcUCCCGCCu -3'
miRNA:   3'- gUUCUG----UCGCGUGUU----CCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 138327 0.72 0.618931
Target:  5'- --uGGCAGCGCAuUGAGGcgCuCCUGCCu -3'
miRNA:   3'- guuCUGUCGCGU-GUUCCuaG-GGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 163039 0.69 0.787172
Target:  5'- -uAGGCcgAGcCGCACGcuGcAUCCCCGCCg -3'
miRNA:   3'- guUCUG--UC-GCGUGUucC-UAGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 128777 0.69 0.787172
Target:  5'- uCAAGuACuGCGCGCAAGGAccgaggcggcguUCCaaaCGUCg -3'
miRNA:   3'- -GUUC-UGuCGCGUGUUCCU------------AGGg--GCGG- -5'
9670 3' -55.6 NC_002577.1 + 138244 0.68 0.83926
Target:  5'- --uGGCGGCGCAgcaguuucCGAGGAcggugauggCgCCCGCCg -3'
miRNA:   3'- guuCUGUCGCGU--------GUUCCUa--------G-GGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 160382 0.67 0.877593
Target:  5'- -cGGACAG-GCGCc-GGAcCUCCGCCu -3'
miRNA:   3'- guUCUGUCgCGUGuuCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 43974 0.68 0.83926
Target:  5'- cCGAG-CAGCGUACGcGcGuUCCCgGCCa -3'
miRNA:   3'- -GUUCuGUCGCGUGUuC-CuAGGGgCGG- -5'
9670 3' -55.6 NC_002577.1 + 133934 0.68 0.831003
Target:  5'- cCAGGguccGCcGCGCGCAugcucgcuAGGGUCCgCCGCg -3'
miRNA:   3'- -GUUC----UGuCGCGUGU--------UCCUAGG-GGCGg -5'
9670 3' -55.6 NC_002577.1 + 10960 0.76 0.398171
Target:  5'- -cGGACGGCGgGCcggccAGGGAacgacggUCCCCGCCg -3'
miRNA:   3'- guUCUGUCGCgUG-----UUCCU-------AGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 116919 0.68 0.855203
Target:  5'- gGGGugAGC-CACAuuGGGAagCCCGUCu -3'
miRNA:   3'- gUUCugUCGcGUGU--UCCUagGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 136424 0.75 0.460333
Target:  5'- gCGAGGgAGUGCucgccacGCGAGcGAUCUCCGCCa -3'
miRNA:   3'- -GUUCUgUCGCG-------UGUUC-CUAGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 141433 0.69 0.822566
Target:  5'- -cAGGgAGCGCGgAAGGAgUCCUGCUc -3'
miRNA:   3'- guUCUgUCGCGUgUUCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 140216 0.68 0.862118
Target:  5'- gAAGcCcGCGCcccugguACGGGGGcCCCCGCCc -3'
miRNA:   3'- gUUCuGuCGCG-------UGUUCCUaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 141088 0.67 0.884627
Target:  5'- aGGGGCucguGCGCcgGCAAGGcUgCCCGCg -3'
miRNA:   3'- gUUCUGu---CGCG--UGUUCCuAgGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 156149 0.75 0.470566
Target:  5'- --cGACGGCGCGCAucaGGGGUCuCCUGgCg -3'
miRNA:   3'- guuCUGUCGCGUGU---UCCUAG-GGGCgG- -5'
9670 3' -55.6 NC_002577.1 + 134748 0.7 0.759136
Target:  5'- gGAGcGCAGgGCGaAAGGA-CCCCGCUu -3'
miRNA:   3'- gUUC-UGUCgCGUgUUCCUaGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.