miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9674 3' -66.4 NC_002577.1 + 163273 0.76 0.117241
Target:  5'- cGGgcgGCCUagcgaGCGCCCGcGCGGcCGGCGgGCa -3'
miRNA:   3'- -UCa--UGGG-----CGCGGGC-CGCC-GCCGCgCG- -5'
9674 3' -66.4 NC_002577.1 + 163202 0.67 0.432874
Target:  5'- -cUGgCCGCGCggagccgCCGGCGGuCGGCGgucuaaCGCu -3'
miRNA:   3'- ucAUgGGCGCG-------GGCCGCC-GCCGC------GCG- -5'
9674 3' -66.4 NC_002577.1 + 162353 0.69 0.311971
Target:  5'- --gACCCGUgGCCUGuacgaggaggaggaGCGGCGGCGaaaGCg -3'
miRNA:   3'- ucaUGGGCG-CGGGC--------------CGCCGCCGCg--CG- -5'
9674 3' -66.4 NC_002577.1 + 160113 0.68 0.355764
Target:  5'- cGGUAcgauCCCGCgagaagGCCCGaCGGCugcaacgcguGGCGCGCc -3'
miRNA:   3'- -UCAU----GGGCG------CGGGCcGCCG----------CCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 159959 0.66 0.502683
Target:  5'- ----aCCGCGCCCGGacCGuCGGgucCGCGCa -3'
miRNA:   3'- ucaugGGCGCGGGCC--GCcGCC---GCGCG- -5'
9674 3' -66.4 NC_002577.1 + 159560 0.7 0.273586
Target:  5'- cAGUACCUGCGagucauagacacgCUGGCGGCGaUGUGCg -3'
miRNA:   3'- -UCAUGGGCGCg------------GGCCGCCGCcGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 159450 0.66 0.484958
Target:  5'- cGUGacggCCGCGCCCGGCGaaCuGUGCGa -3'
miRNA:   3'- uCAUg---GGCGCGGGCCGCc-GcCGCGCg -5'
9674 3' -66.4 NC_002577.1 + 159070 0.67 0.425467
Target:  5'- cGGUGaUgGCGCCCgccGGCcGCGGCcGCGCc -3'
miRNA:   3'- -UCAUgGgCGCGGG---CCGcCGCCG-CGCG- -5'
9674 3' -66.4 NC_002577.1 + 158571 0.71 0.226024
Target:  5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3'
miRNA:   3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 157992 1.1 0.000337
Target:  5'- gAGUACCCGCGCCCGGCGGCGGCGCGCa -3'
miRNA:   3'- -UCAUGGGCGCGGGCCGCCGCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 157120 0.67 0.417326
Target:  5'- --aGCCCGCGCCCcuGGUacGGgGGCcccCGCc -3'
miRNA:   3'- ucaUGGGCGCGGG--CCG--CCgCCGc--GCG- -5'
9674 3' -66.4 NC_002577.1 + 157023 0.66 0.473599
Target:  5'- uGGUgGCCCGCcagCCGGgGagccacgcuauguuGUGGCGCGCg -3'
miRNA:   3'- -UCA-UGGGCGcg-GGCCgC--------------CGCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 155987 0.69 0.31396
Target:  5'- cGUGCCCccgaCGCCCGGuCGGCaGCcCGUc -3'
miRNA:   3'- uCAUGGGc---GCGGGCC-GCCGcCGcGCG- -5'
9674 3' -66.4 NC_002577.1 + 155802 0.68 0.370542
Target:  5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3'
miRNA:   3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 153379 0.66 0.484958
Target:  5'- cGUACCgCGCGCCaauuuucGUGuaGGUGUGCg -3'
miRNA:   3'- uCAUGG-GCGCGGgc-----CGCcgCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 152799 0.71 0.223992
Target:  5'- --gGCCCGCGCUgcaguucaccgagCGuGCGGCGGCaauuuccaggaccuGCGCg -3'
miRNA:   3'- ucaUGGGCGCGG-------------GC-CGCCGCCG--------------CGCG- -5'
9674 3' -66.4 NC_002577.1 + 141535 0.68 0.370542
Target:  5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3'
miRNA:   3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 141350 0.69 0.31396
Target:  5'- cGUGCCCccgaCGCCCGGuCGGCaGCcCGUc -3'
miRNA:   3'- uCAUGGGc---GCGGGCC-GCCGcCGcGCG- -5'
9674 3' -66.4 NC_002577.1 + 140315 0.66 0.473599
Target:  5'- uGGUgGCCCGCcagCCGGgGagccacgcuauguuGUGGCGCGCg -3'
miRNA:   3'- -UCA-UGGGCGcg-GGCCgC--------------CGCCGCGCG- -5'
9674 3' -66.4 NC_002577.1 + 140218 0.67 0.417326
Target:  5'- --aGCCCGCGCCCcuGGUacGGgGGCcccCGCc -3'
miRNA:   3'- ucaUGGGCGCGGG--CCG--CCgCCGc--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.