miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9677 5' -56.2 NC_002577.1 + 20309 0.66 0.900083
Target:  5'- ---cUAGGGCCAUgaaGCAUagGGCCGUc -3'
miRNA:   3'- aauaGUCCCGGUGg--CGUAa-UCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 161076 0.66 0.886676
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GUGG-CgUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 136262 0.66 0.886676
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GUGG-CgUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 112097 0.66 0.886676
Target:  5'- -aGUCAcGGGCCauGCUGCGgaacuGCCGUa -3'
miRNA:   3'- aaUAGU-CCCGG--UGGCGUaau--CGGCGc -5'
9677 5' -56.2 NC_002577.1 + 70485 0.66 0.872353
Target:  5'- aUGUCGGccgaacuaagucGGCCACCGCA--GGCCuacGCu -3'
miRNA:   3'- aAUAGUC------------CCGGUGGCGUaaUCGG---CGc -5'
9677 5' -56.2 NC_002577.1 + 71578 0.66 0.872353
Target:  5'- -aAUCGcGGGUCuCCGC--UAGCCGUGc -3'
miRNA:   3'- aaUAGU-CCCGGuGGCGuaAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 97872 0.67 0.857151
Target:  5'- --uUCucGGGCCGacauuguuuuCCGCGacAGCCGCGg -3'
miRNA:   3'- aauAGu-CCCGGU----------GGCGUaaUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 109242 0.67 0.848433
Target:  5'- -aAUCAGGaaGCCGCUGCGUUgcuuccaacggaaGGCgGCa -3'
miRNA:   3'- aaUAGUCC--CGGUGGCGUAA-------------UCGgCGc -5'
9677 5' -56.2 NC_002577.1 + 517 0.67 0.841119
Target:  5'- cUGUUAGGGUCACUGUuaUGGCCu-- -3'
miRNA:   3'- aAUAGUCCCGGUGGCGuaAUCGGcgc -5'
9677 5' -56.2 NC_002577.1 + 133097 0.67 0.841119
Target:  5'- cUGUUAGGGUCACUGUuaUGGCCu-- -3'
miRNA:   3'- aAUAGUCCCGGUGGCGuaAUCGGcgc -5'
9677 5' -56.2 NC_002577.1 + 49267 0.67 0.832809
Target:  5'- --uUUAGGGUCGCCGUAUuuauuggcaUGGuuGUGg -3'
miRNA:   3'- aauAGUCCCGGUGGCGUA---------AUCggCGC- -5'
9677 5' -56.2 NC_002577.1 + 82109 0.68 0.806792
Target:  5'- ---gCGGGGCCugCGCGccacuacgcGCCGCu -3'
miRNA:   3'- aauaGUCCCGGugGCGUaau------CGGCGc -5'
9677 5' -56.2 NC_002577.1 + 51155 0.68 0.806792
Target:  5'- --cUCGGGGCaaaAUUGCAaaguGCCGCGg -3'
miRNA:   3'- aauAGUCCCGg--UGGCGUaau-CGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 123501 0.69 0.740859
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GUGGCGUaauCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 10113 0.69 0.740859
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GUGGCGUaauCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 1576 0.69 0.714988
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GUGGCGUaa-----------UCGG-CGC- -5'
9677 5' -56.2 NC_002577.1 + 132038 0.69 0.714988
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GUGGCGUaa-----------UCGG-CGC- -5'
9677 5' -56.2 NC_002577.1 + 132222 0.69 0.709951
Target:  5'- -gGUCGGGGCUAggagcgcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCGGU-------GGCGUAa--------UCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 1392 0.69 0.709951
Target:  5'- -gGUCGGGGCUAggagcgcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCGGU-------GGCGUAa--------UCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 158845 0.7 0.670181
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGUGgCGuaaUCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.