miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9677 5' -56.2 NC_002577.1 + 160166 1.07 0.003387
Target:  5'- gUUAUCAGGGCCACCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGUGGCGUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 137172 1.06 0.003789
Target:  5'- gUUAUCAGGGCCGCCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGUGGCGUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 161471 0.78 0.271438
Target:  5'- -gAUCGGGGCgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgUGG---------------CGUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 135866 0.75 0.382911
Target:  5'- -gAUCGGGGUgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgUGG---------------CGUAAUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 156406 0.74 0.440735
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGUGGCGuaaUCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 140931 0.74 0.440735
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGUGGCGuaaUCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 41766 0.71 0.639232
Target:  5'- --uUCGGGGCCGgucaCGCuucuguugGGCCGCGa -3'
miRNA:   3'- aauAGUCCCGGUg---GCGuaa-----UCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 123730 0.71 0.639232
Target:  5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3'
miRNA:   3'- aaUAGUCCC---------GGuGGCGUAA------------UCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 9884 0.71 0.639232
Target:  5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3'
miRNA:   3'- aaUAGUCCC---------GGuGGCGUAA------------UCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 147454 0.7 0.659885
Target:  5'- -aGUgGGGGCCGCUGaucucuGCCGCGc -3'
miRNA:   3'- aaUAgUCCCGGUGGCguaau-CGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 128974 0.7 0.659885
Target:  5'- -----cGGGCCgcGCUGCAgggaUGGCCGCGg -3'
miRNA:   3'- aauaguCCCGG--UGGCGUa---AUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 4639 0.7 0.659885
Target:  5'- -----cGGGCCgcGCUGCAgggaUGGCCGCGg -3'
miRNA:   3'- aauaguCCCGG--UGGCGUa---AUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 138492 0.7 0.670181
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGUGgCGuaaUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 158845 0.7 0.670181
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGUGgCGuaaUCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 132222 0.69 0.709951
Target:  5'- -gGUCGGGGCUAggagcgcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCGGU-------GGCGUAa--------UCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 1392 0.69 0.709951
Target:  5'- -gGUCGGGGCUAggagcgcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCGGU-------GGCGUAa--------UCGGCGc -5'
9677 5' -56.2 NC_002577.1 + 1576 0.69 0.714988
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GUGGCGUaa-----------UCGG-CGC- -5'
9677 5' -56.2 NC_002577.1 + 132038 0.69 0.714988
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GUGGCGUaa-----------UCGG-CGC- -5'
9677 5' -56.2 NC_002577.1 + 10113 0.69 0.740859
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GUGGCGUaauCGGCGC- -5'
9677 5' -56.2 NC_002577.1 + 123501 0.69 0.740859
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GUGGCGUaauCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.