Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9678 | 3' | -57.1 | NC_002577.1 | + | 4580 | 0.69 | 0.718523 |
Target: 5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3' miRNA: 3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 8103 | 0.69 | 0.728329 |
Target: 5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3' miRNA: 3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 9171 | 0.67 | 0.811839 |
Target: 5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3' miRNA: 3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 10675 | 0.7 | 0.648333 |
Target: 5'- -cGACGU-CCGACGGUuccgGACGCCGCGa -3' miRNA: 3'- ucUUGCGcGGUUGCCGa---CUGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 10979 | 0.66 | 0.853031 |
Target: 5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3' miRNA: 3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 11249 | 0.69 | 0.718522 |
Target: 5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3' miRNA: 3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 11601 | 0.67 | 0.837097 |
Target: 5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3' miRNA: 3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 19825 | 0.68 | 0.775957 |
Target: 5'- gAGAGCgGCGCgGcAUGGUauucGGCGCCGCAc -3' miRNA: 3'- -UCUUG-CGCGgU-UGCCGa---CUGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 24262 | 0.7 | 0.658464 |
Target: 5'- cAGAACGgGC--GCGaGCUGACGCCuCGu -3' miRNA: 3'- -UCUUGCgCGguUGC-CGACUGCGGuGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 31311 | 0.69 | 0.6987 |
Target: 5'- uGAugGCGCCuACGGCgauauaacacgUGAUGCaUACAa -3' miRNA: 3'- uCUugCGCGGuUGCCG-----------ACUGCG-GUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 45198 | 0.66 | 0.853032 |
Target: 5'- -aAACcCGCCAggagGCGGCgaucGACGCCAUc -3' miRNA: 3'- ucUUGcGCGGU----UGCCGa---CUGCGGUGu -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 47158 | 0.66 | 0.889326 |
Target: 5'- cGGACGCGgcCCGuugacgaccAUGGCcgGAUGCCGCu -3' miRNA: 3'- uCUUGCGC--GGU---------UGCCGa-CUGCGGUGu -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 54818 | 0.72 | 0.567465 |
Target: 5'- uGGAACGagcuGCUucuGCGGCUgaacuugccGACGCCGCAg -3' miRNA: 3'- -UCUUGCg---CGGu--UGCCGA---------CUGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 55539 | 0.68 | 0.793287 |
Target: 5'- cAGAGCGUucguaacgacgaaGUCAAC-GCUGcCGCCGCAg -3' miRNA: 3'- -UCUUGCG-------------CGGUUGcCGACuGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 62488 | 0.67 | 0.803088 |
Target: 5'- --uGCGCGuCCAggACGGCgGuuGCCGCAu -3' miRNA: 3'- ucuUGCGC-GGU--UGCCGaCugCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 64122 | 0.67 | 0.837096 |
Target: 5'- aGGGAUGCGagGGCGGUUGGagugucgaugcUGCCGCGa -3' miRNA: 3'- -UCUUGCGCggUUGCCGACU-----------GCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 78862 | 0.67 | 0.821279 |
Target: 5'- aGGGGCGCGUCGGaGGCgucuaaauauguaugGAUGCCugGg -3' miRNA: 3'- -UCUUGCGCGGUUgCCGa--------------CUGCGGugU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 81273 | 0.66 | 0.853032 |
Target: 5'- cGAG-GCGCgCAGCGGC-GACuGCUGCAg -3' miRNA: 3'- uCUUgCGCG-GUUGCCGaCUG-CGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 91547 | 0.67 | 0.837096 |
Target: 5'- gAGAAUaaagGgGCUAcCGGUgGACGCCGCAc -3' miRNA: 3'- -UCUUG----CgCGGUuGCCGaCUGCGGUGU- -5' |
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9678 | 3' | -57.1 | NC_002577.1 | + | 91577 | 0.71 | 0.607758 |
Target: 5'- -aGACGCGCCGuGCGGCUG--GCUACGg -3' miRNA: 3'- ucUUGCGCGGU-UGCCGACugCGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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