Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9680 | 3' | -50.2 | NC_002577.1 | + | 132450 | 0.7 | 0.957174 |
Target: 5'- --cAGCCUUUGCgUCGCCGccggGAGACggCg -3' miRNA: 3'- gaaUCGGAAGUG-AGCGGC----UUCUGaaG- -5' |
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9680 | 3' | -50.2 | NC_002577.1 | + | 1163 | 0.7 | 0.957174 |
Target: 5'- --cAGCCUUUGCgUCGCCGccggGAGACggCg -3' miRNA: 3'- gaaUCGGAAGUG-AGCGGC----UUCUGaaG- -5' |
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9680 | 3' | -50.2 | NC_002577.1 | + | 15721 | 0.71 | 0.934473 |
Target: 5'- -aUAGCCcgUCGacaaUUGCUGAGGAUUUCg -3' miRNA: 3'- gaAUCGGa-AGUg---AGCGGCUUCUGAAG- -5' |
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9680 | 3' | -50.2 | NC_002577.1 | + | 86966 | 0.71 | 0.917766 |
Target: 5'- -aUGGCCUUC-CUccggaCGCCGAuucAGAUUUCa -3' miRNA: 3'- gaAUCGGAAGuGA-----GCGGCU---UCUGAAG- -5' |
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9680 | 3' | -50.2 | NC_002577.1 | + | 162127 | 1.12 | 0.006904 |
Target: 5'- aCUUAGCCUUCACUCGCCGAAGACUUCa -3' miRNA: 3'- -GAAUCGGAAGUGAGCGGCUUCUGAAG- -5' |
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9680 | 3' | -50.2 | NC_002577.1 | + | 135211 | 1.12 | 0.006904 |
Target: 5'- aCUUAGCCUUCACUCGCCGAAGACUUCa -3' miRNA: 3'- -GAAUCGGAAGUGAGCGGCUUCUGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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