miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9680 5' -60 NC_002577.1 + 140425 0.66 0.782372
Target:  5'- cGAGcGuuuCCGAGGGCGggGGcccccguaccaGGGGCgCGg -3'
miRNA:   3'- aCUC-Cc--GGUUCCCGCuuCC-----------UCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 156912 0.66 0.782372
Target:  5'- cGAGcGuuuCCGAGGGCGggGGcccccguaccaGGGGCgCGg -3'
miRNA:   3'- aCUC-Cc--GGUUCCCGCuuCC-----------UCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 14585 0.66 0.77968
Target:  5'- cGAGGGCCuauuucau-GGGGGACCGg -3'
miRNA:   3'- aCUCCCGGuucccgcuuCCUCCUGGC- -5'
9680 5' -60 NC_002577.1 + 64124 0.66 0.773356
Target:  5'- aGAGGGaugCGAGGGCGGuuGGAGuGucgaugcuGCCGc -3'
miRNA:   3'- aCUCCCg--GUUCCCGCUu-CCUC-C--------UGGC- -5'
9680 5' -60 NC_002577.1 + 11634 0.66 0.754978
Target:  5'- gUGGGGGCgGgaggaugugugGGGGaaggGAAGGGGGagacgGCCGa -3'
miRNA:   3'- -ACUCCCGgU-----------UCCCg---CUUCCUCC-----UGGC- -5'
9680 5' -60 NC_002577.1 + 6278 0.66 0.754978
Target:  5'- gGGGGGagaaggGAGGGgGGAGGGGGaagGCUGa -3'
miRNA:   3'- aCUCCCgg----UUCCCgCUUCCUCC---UGGC- -5'
9680 5' -60 NC_002577.1 + 121979 0.66 0.754978
Target:  5'- gUGGGGGCgGgaggaugugugGGGGaaggGAAGGGGGagacgGCCGa -3'
miRNA:   3'- -ACUCCCGgU-----------UCCCg---CUUCCUCC-----UGGC- -5'
9680 5' -60 NC_002577.1 + 127336 0.66 0.754978
Target:  5'- gGGGGGagaaggGAGGGgGGAGGGGGaagGCUGa -3'
miRNA:   3'- aCUCCCgg----UUCCCgCUUCCUCC---UGGC- -5'
9680 5' -60 NC_002577.1 + 127297 0.66 0.754978
Target:  5'- gGGGGGagaaggGAGGGgGGAGGGGGaagGCUGa -3'
miRNA:   3'- aCUCCCgg----UUCCCgCUUCCUCC---UGGC- -5'
9680 5' -60 NC_002577.1 + 6317 0.66 0.754978
Target:  5'- gGGGGGagaaggGAGGGgGGAGGGGGaagGCUGa -3'
miRNA:   3'- aCUCCCgg----UUCCCgCUUCCUCC---UGGC- -5'
9680 5' -60 NC_002577.1 + 11707 0.66 0.736191
Target:  5'- aGAgcGGaGCCGGGGaCGGAGGGGGcgacccggacGCCGg -3'
miRNA:   3'- aCU--CC-CGGUUCCcGCUUCCUCC----------UGGC- -5'
9680 5' -60 NC_002577.1 + 143958 0.66 0.736191
Target:  5'- cGGGGGg-GGGGGgGggGGGGGAUg- -3'
miRNA:   3'- aCUCCCggUUCCCgCuuCCUCCUGgc -5'
9680 5' -60 NC_002577.1 + 83914 0.66 0.736191
Target:  5'- --uGGGCUAu--GCGGAGGAGGACg- -3'
miRNA:   3'- acuCCCGGUuccCGCUUCCUCCUGgc -5'
9680 5' -60 NC_002577.1 + 121907 0.66 0.736191
Target:  5'- aGAgcGGaGCCGGGGaCGGAGGGGGcgacccggacGCCGg -3'
miRNA:   3'- aCU--CC-CGGUUCCcGCUUCCUCC----------UGGC- -5'
9680 5' -60 NC_002577.1 + 74137 0.66 0.735242
Target:  5'- -uGGGGCCGuuuugagAGGGCGGAGcGAGaGAUUu -3'
miRNA:   3'- acUCCCGGU-------UCCCGCUUC-CUC-CUGGc -5'
9680 5' -60 NC_002577.1 + 1784 0.67 0.718028
Target:  5'- -uAGGGCCuggcagggguaggguAGGcGCGAAGGuuGGGCCc -3'
miRNA:   3'- acUCCCGGu--------------UCC-CGCUUCCu-CCUGGc -5'
9680 5' -60 NC_002577.1 + 131829 0.67 0.718028
Target:  5'- -uAGGGCCuggcagggguaggguAGGcGCGAAGGuuGGGCCc -3'
miRNA:   3'- acUCCCGGu--------------UCC-CGCUUCCu-CCUGGc -5'
9680 5' -60 NC_002577.1 + 140725 0.67 0.707394
Target:  5'- gGGGGGUgGGGGGggcacgccCGAGGGAGGGg-- -3'
miRNA:   3'- aCUCCCGgUUCCC--------GCUUCCUCCUggc -5'
9680 5' -60 NC_002577.1 + 140362 0.67 0.707394
Target:  5'- aGAGGGCUggGGGgucCGggGaaaGAGG-CCu -3'
miRNA:   3'- aCUCCCGGuuCCC---GCuuC---CUCCuGGc -5'
9680 5' -60 NC_002577.1 + 156612 0.67 0.707394
Target:  5'- gGGGGGUgGGGGGggcacgccCGAGGGAGGGg-- -3'
miRNA:   3'- aCUCCCGgUUCCC--------GCUUCCUCCUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.