miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9680 5' -60 NC_002577.1 + 156612 0.67 0.707394
Target:  5'- gGGGGGUgGGGGGggcacgccCGAGGGAGGGg-- -3'
miRNA:   3'- aCUCCCGgUUCCC--------GCUUCCUCCUggc -5'
9680 5' -60 NC_002577.1 + 160592 0.67 0.705453
Target:  5'- gGGGGGCCuugugcagcuGGCGAcaggcGGAGGuCCGg -3'
miRNA:   3'- aCUCCCGGuuc-------CCGCUu----CCUCCuGGC- -5'
9680 5' -60 NC_002577.1 + 136745 0.67 0.705453
Target:  5'- gGGGGGCCuugugcagcuGGCGAcaggcGGAGGuCCGg -3'
miRNA:   3'- aCUCCCGGuuc-------CCGCUu----CCUCCuGGC- -5'
9680 5' -60 NC_002577.1 + 137323 0.67 0.687883
Target:  5'- --cGuGGCCGGcGGGuCGAGGGAaGGGCCc -3'
miRNA:   3'- acuC-CCGGUU-CCC-GCUUCCU-CCUGGc -5'
9680 5' -60 NC_002577.1 + 126283 0.67 0.687883
Target:  5'- gGGGGGgaGGGGGgGggGGGGGGgaGa -3'
miRNA:   3'- aCUCCCggUUCCCgCuuCCUCCUggC- -5'
9680 5' -60 NC_002577.1 + 7331 0.67 0.687883
Target:  5'- gGGGGGgaGGGGGgGggGGGGGGgaGa -3'
miRNA:   3'- aCUCCCggUUCCCgCuuCCUCCUggC- -5'
9680 5' -60 NC_002577.1 + 160015 0.67 0.687883
Target:  5'- --cGuGGCCGGcGGGuCGAGGGAaGGGCCc -3'
miRNA:   3'- acuC-CCGGUU-CCC-GCUUCCU-CCUGGc -5'
9680 5' -60 NC_002577.1 + 81271 0.67 0.678058
Target:  5'- cUGAGguGGCCGcGGGCGuGGcgcagcacGGGGACCGu -3'
miRNA:   3'- -ACUC--CCGGUuCCCGCuUC--------CUCCUGGC- -5'
9680 5' -60 NC_002577.1 + 162963 0.68 0.668197
Target:  5'- --uGGGUCucgggGGGGGgGggGGGGGGCgCGa -3'
miRNA:   3'- acuCCCGG-----UUCCCgCuuCCUCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 134364 0.68 0.668197
Target:  5'- --uGGGUCucgggGGGGGgGggGGGGGGCgCGa -3'
miRNA:   3'- acuCCCGG-----UUCCCgCuuCCUCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 131026 0.68 0.648401
Target:  5'- --cGGGCCuuuAGGGUGAuGGuuGGGCCc -3'
miRNA:   3'- acuCCCGGu--UCCCGCUuCCu-CCUGGc -5'
9680 5' -60 NC_002577.1 + 1557 0.68 0.648401
Target:  5'- uUGAGGGUCGGGgccGGCGAGGGuGucguuCCGg -3'
miRNA:   3'- -ACUCCCGGUUC---CCGCUUCCuCcu---GGC- -5'
9680 5' -60 NC_002577.1 + 140559 0.68 0.648401
Target:  5'- gGGGGGCUAAGGG-GAgguggcguAGGAGGAn-- -3'
miRNA:   3'- aCUCCCGGUUCCCgCU--------UCCUCCUggc -5'
9680 5' -60 NC_002577.1 + 2588 0.68 0.648401
Target:  5'- --cGGGCCuuuAGGGUGAuGGuuGGGCCc -3'
miRNA:   3'- acuCCCGGu--UCCCGCUuCCu-CCUGGc -5'
9680 5' -60 NC_002577.1 + 132057 0.68 0.648401
Target:  5'- uUGAGGGUCGGGgccGGCGAGGGuGucguuCCGg -3'
miRNA:   3'- -ACUCCCGGUUC---CCGCUUCCuCcu---GGC- -5'
9680 5' -60 NC_002577.1 + 156779 0.68 0.648401
Target:  5'- gGGGGGCUAAGGG-GAgguggcguAGGAGGAn-- -3'
miRNA:   3'- aCUCCCGGUUCCCgCU--------UCCUCCUggc -5'
9680 5' -60 NC_002577.1 + 2721 0.68 0.64245
Target:  5'- --uGGGCUAugcucgguuuucgggGGGGgGggGGGGGugUGg -3'
miRNA:   3'- acuCCCGGU---------------UCCCgCuuCCUCCugGC- -5'
9680 5' -60 NC_002577.1 + 130892 0.68 0.64245
Target:  5'- --uGGGCUAugcucgguuuucgggGGGGgGggGGGGGugUGg -3'
miRNA:   3'- acuCCCGGU---------------UCCCgCuuCCUCCugGC- -5'
9680 5' -60 NC_002577.1 + 127423 0.68 0.628557
Target:  5'- aGAGGGg-AAGGGgGAAGGGGGGaaGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCCUggC- -5'
9680 5' -60 NC_002577.1 + 6191 0.68 0.628557
Target:  5'- aGAGGGg-AAGGGgGAAGGGGGGaaGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCCUggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.