miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9680 5' -60 NC_002577.1 + 135245 1.09 0.00137
Target:  5'- cUGAGGGCCAAGGGCGAAGGAGGACCGg -3'
miRNA:   3'- -ACUCCCGGUUCCCGCUUCCUCCUGGC- -5'
9680 5' -60 NC_002577.1 + 135658 0.69 0.585997
Target:  5'- -aAGGGCCGAGGaggcuGCGAgguAGGAgagagcggucauugGGACCGu -3'
miRNA:   3'- acUCCCGGUUCC-----CGCU---UCCU--------------CCUGGC- -5'
9680 5' -60 NC_002577.1 + 127423 0.68 0.628557
Target:  5'- aGAGGGg-AAGGGgGAAGGGGGGaaGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCCUggC- -5'
9680 5' -60 NC_002577.1 + 156912 0.66 0.782372
Target:  5'- cGAGcGuuuCCGAGGGCGggGGcccccguaccaGGGGCgCGg -3'
miRNA:   3'- aCUC-Cc--GGUUCCCGCuuCC-----------UCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 124161 0.73 0.372835
Target:  5'- cGAGGGCCGugcggggaaacgcagAGGGCuccuacggacgaccGGAGGAGGgagacGCCGa -3'
miRNA:   3'- aCUCCCGGU---------------UCCCG--------------CUUCCUCC-----UGGC- -5'
9680 5' -60 NC_002577.1 + 142354 0.73 0.379986
Target:  5'- cGAcGGGgCAAuaggcgcugcguGGGgGAGGGGGGGCCGg -3'
miRNA:   3'- aCU-CCCgGUU------------CCCgCUUCCUCCUGGC- -5'
9680 5' -60 NC_002577.1 + 128539 0.72 0.404474
Target:  5'- gGAGGGCUcuGGGCGAAGaaccGGCCGa -3'
miRNA:   3'- aCUCCCGGuuCCCGCUUCcuc-CUGGC- -5'
9680 5' -60 NC_002577.1 + 1633 0.72 0.412855
Target:  5'- gGGGGGggGGGGGgGAGGGGGGAUgGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCCUGgC- -5'
9680 5' -60 NC_002577.1 + 121874 0.71 0.456314
Target:  5'- aGGGGGa-GGGGGgGAAGGAGGAgaGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCCUggC- -5'
9680 5' -60 NC_002577.1 + 138490 0.69 0.57911
Target:  5'- cGaAGGGUaCGAGGcCGggGGAGG-CCGg -3'
miRNA:   3'- aC-UCCCG-GUUCCcGCuuCCUCCuGGC- -5'
9680 5' -60 NC_002577.1 + 122662 0.7 0.540151
Target:  5'- cGGGGGUCGccgacGGGUgGAAGGGGGAUgGg -3'
miRNA:   3'- aCUCCCGGUu----CCCG-CUUCCUCCUGgC- -5'
9680 5' -60 NC_002577.1 + 133024 0.72 0.429935
Target:  5'- -uAGGGCCAcauuaAGGGCuuGGGccAGGGCCGu -3'
miRNA:   3'- acUCCCGGU-----UCCCGcuUCC--UCCUGGC- -5'
9680 5' -60 NC_002577.1 + 139530 0.76 0.232057
Target:  5'- uUGAaGGCCGAGGaaGCGAAGGAGcGCCGa -3'
miRNA:   3'- -ACUcCCGGUUCC--CGCUUCCUCcUGGC- -5'
9680 5' -60 NC_002577.1 + 141403 0.7 0.540151
Target:  5'- -aGGGGUUAAucGGGCGGAuGGGGACCa -3'
miRNA:   3'- acUCCCGGUU--CCCGCUUcCUCCUGGc -5'
9680 5' -60 NC_002577.1 + 140589 0.76 0.248383
Target:  5'- gGGGGGCUAAGGGgGGguggcguaggaggAGGGGGGCUa -3'
miRNA:   3'- aCUCCCGGUUCCCgCU-------------UCCUCCUGGc -5'
9680 5' -60 NC_002577.1 + 9516 0.72 0.421343
Target:  5'- gGGGGGggGGGGGgGAGGGAGGgaaauaGCCGg -3'
miRNA:   3'- aCUCCCggUUCCCgCUUCCUCC------UGGC- -5'
9680 5' -60 NC_002577.1 + 124522 0.69 0.57911
Target:  5'- cGAGGGg-GGGGGCGAcGGGcGACCGg -3'
miRNA:   3'- aCUCCCggUUCCCGCUuCCUcCUGGC- -5'
9680 5' -60 NC_002577.1 + 10531 0.69 0.588953
Target:  5'- -cGGGGCCGGGGGgaaaguCGggGGGcGACCc -3'
miRNA:   3'- acUCCCGGUUCCC------GCuuCCUcCUGGc -5'
9680 5' -60 NC_002577.1 + 154853 0.73 0.348914
Target:  5'- cGGGGGggGGGGGgGggGGGGGGCgCGg -3'
miRNA:   3'- aCUCCCggUUCCCgCuuCCUCCUG-GC- -5'
9680 5' -60 NC_002577.1 + 126956 0.73 0.388038
Target:  5'- cGAGaGGCguGGGGgGggGGGGaGGCCu -3'
miRNA:   3'- aCUC-CCGguUCCCgCuuCCUC-CUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.