miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9681 3' -54.9 NC_002577.1 + 13091 0.66 0.958192
Target:  5'- -aCUACUUUCUCCGuuuaaacuGCUCCCc-- -3'
miRNA:   3'- ggGAUGGAAGAGGCuuu-----CGAGGGccc -5'
9681 3' -54.9 NC_002577.1 + 10317 0.66 0.95047
Target:  5'- uCCCUACag-CUCgGGAccGCUCCCGa- -3'
miRNA:   3'- -GGGAUGgaaGAGgCUUu-CGAGGGCcc -5'
9681 3' -54.9 NC_002577.1 + 123297 0.66 0.95047
Target:  5'- uCCCUACag-CUCgGGAccGCUCCCGa- -3'
miRNA:   3'- -GGGAUGgaaGAGgCUUu-CGAGGGCcc -5'
9681 3' -54.9 NC_002577.1 + 73764 0.67 0.946274
Target:  5'- aCCCauCCUUCcgaCgCGGAuGCUCCCGGa -3'
miRNA:   3'- -GGGauGGAAGa--G-GCUUuCGAGGGCCc -5'
9681 3' -54.9 NC_002577.1 + 29397 0.67 0.946274
Target:  5'- ---aACUggCUCCGAacGAGCUCCCGa- -3'
miRNA:   3'- gggaUGGaaGAGGCU--UUCGAGGGCcc -5'
9681 3' -54.9 NC_002577.1 + 3576 0.67 0.94185
Target:  5'- gUCCU-CCUUCggaCGAGuGCUUgCCGGGg -3'
miRNA:   3'- -GGGAuGGAAGag-GCUUuCGAG-GGCCC- -5'
9681 3' -54.9 NC_002577.1 + 130038 0.67 0.94185
Target:  5'- gUCCU-CCUUCggaCGAGuGCUUgCCGGGg -3'
miRNA:   3'- -GGGAuGGAAGag-GCUUuCGAG-GGCCC- -5'
9681 3' -54.9 NC_002577.1 + 161007 0.69 0.870848
Target:  5'- cCUCUGCCUaC-CgGAGAGCgccgCCUGGGc -3'
miRNA:   3'- -GGGAUGGAaGaGgCUUUCGa---GGGCCC- -5'
9681 3' -54.9 NC_002577.1 + 250 0.69 0.863493
Target:  5'- uUCUGCCUguagCCGAcAGUUCgCGGGg -3'
miRNA:   3'- gGGAUGGAaga-GGCUuUCGAGgGCCC- -5'
9681 3' -54.9 NC_002577.1 + 133364 0.69 0.863493
Target:  5'- uUCUGCCUguagCCGAcAGUUCgCGGGg -3'
miRNA:   3'- gGGAUGGAaga-GGCUuUCGAGgGCCC- -5'
9681 3' -54.9 NC_002577.1 + 16364 0.71 0.797894
Target:  5'- gCCCgGCCUUgUCCGGAGGgUCCaGGu -3'
miRNA:   3'- -GGGaUGGAAgAGGCUUUCgAGGgCCc -5'
9681 3' -54.9 NC_002577.1 + 141886 0.71 0.761357
Target:  5'- uUCCUACCgccCUCgGgAGAGUgcucgCCCGGGg -3'
miRNA:   3'- -GGGAUGGaa-GAGgC-UUUCGa----GGGCCC- -5'
9681 3' -54.9 NC_002577.1 + 155451 0.71 0.761357
Target:  5'- uUCCUACCgccCUCgGgAGAGUgcucgCCCGGGg -3'
miRNA:   3'- -GGGAUGGaa-GAGgC-UUUCGa----GGGCCC- -5'
9681 3' -54.9 NC_002577.1 + 162819 1.13 0.002602
Target:  5'- gCCCUACCUUCUCCGAAAGCUCCCGGGg -3'
miRNA:   3'- -GGGAUGGAAGAGGCUUUCGAGGGCCC- -5'
9681 3' -54.9 NC_002577.1 + 134509 1.13 0.002602
Target:  5'- gCCCUACCUUCUCCGAAAGCUCCCGGGg -3'
miRNA:   3'- -GGGAUGGAAGAGGCUUUCGAGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.