miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9681 5' -60.7 NC_002577.1 + 162776 1.11 0.000923
Target:  5'- cUGCCCGGGAACCGAAACCGCGGGCGCg -3'
miRNA:   3'- -ACGGGCCCUUGGCUUUGGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 134552 1.11 0.000923
Target:  5'- cUGCCCGGGAACCGAAACCGCGGGCGCg -3'
miRNA:   3'- -ACGGGCCCUUGGCUUUGGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 135100 0.77 0.220746
Target:  5'- cGCCCGGccauucaguagcgcaGAagcGCCGGcgAGcCCGCGGGCGCg -3'
miRNA:   3'- aCGGGCC---------------CU---UGGCU--UU-GGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 162228 0.77 0.220746
Target:  5'- cGCCCGGccauucaguagcgcaGAagcGCCGGcgAGcCCGCGGGCGCg -3'
miRNA:   3'- aCGGGCC---------------CU---UGGCU--UU-GGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 136914 0.76 0.239489
Target:  5'- gGCUCGGGAgaacuugcgggGCCGggGucguaacaaggcuCCGCGGaGCGCg -3'
miRNA:   3'- aCGGGCCCU-----------UGGCuuU-------------GGCGCC-CGCG- -5'
9681 5' -60.7 NC_002577.1 + 160423 0.76 0.239489
Target:  5'- gGCUCGGGAgaacuugcgggGCCGggGucguaacaaggcuCCGCGGaGCGCg -3'
miRNA:   3'- aCGGGCCCU-----------UGGCuuU-------------GGCGCC-CGCG- -5'
9681 5' -60.7 NC_002577.1 + 36231 0.76 0.243956
Target:  5'- cGCCUuGGGACCGAAAUCGCaaaauuuagaaaggGGGCGUc -3'
miRNA:   3'- aCGGGcCCUUGGCUUUGGCG--------------CCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 125671 0.76 0.251362
Target:  5'- cGCaggGGGAGCgCGGAG-CGCGGGCGCg -3'
miRNA:   3'- aCGgg-CCCUUG-GCUUUgGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 7943 0.76 0.251362
Target:  5'- cGCaggGGGAGCgCGGAG-CGCGGGCGCg -3'
miRNA:   3'- aCGgg-CCCUUG-GCUUUgGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 137214 0.75 0.281578
Target:  5'- cGCCCccgaGGAGCCGAAccguucgcguagGCCGCGuacacGGCGCu -3'
miRNA:   3'- aCGGGc---CCUUGGCUU------------UGGCGC-----CCGCG- -5'
9681 5' -60.7 NC_002577.1 + 160124 0.75 0.281578
Target:  5'- cGCCCccgaGGAGCCGAAccguucgcguagGCCGCGuacacGGCGCu -3'
miRNA:   3'- aCGGGc---CCUUGGCUU------------UGGCGC-----CCGCG- -5'
9681 5' -60.7 NC_002577.1 + 10503 0.74 0.307773
Target:  5'- -uCCCGaGGuuCCGAccucGCCGCGGGUGCg -3'
miRNA:   3'- acGGGC-CCuuGGCUu---UGGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 123111 0.74 0.307773
Target:  5'- -uCCCGaGGuuCCGAccucGCCGCGGGUGCg -3'
miRNA:   3'- acGGGC-CCuuGGCUu---UGGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 103746 0.74 0.317371
Target:  5'- gUGCCUGGGGAgauUgGAAucagcuucuuaugguACCGgGGGCGCg -3'
miRNA:   3'- -ACGGGCCCUU---GgCUU---------------UGGCgCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 137485 0.73 0.365622
Target:  5'- cGUCCccggcaGGGAuguCCGGAcgCGCGGGCGCg -3'
miRNA:   3'- aCGGG------CCCUu--GGCUUugGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 159853 0.73 0.365622
Target:  5'- cGUCCccggcaGGGAuguCCGGAcgCGCGGGCGCg -3'
miRNA:   3'- aCGGG------CCCUu--GGCUUugGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 138475 0.73 0.373361
Target:  5'- gGCCgCGGaGGacggcgcgGCCGcgGCCgGCGGGCGCc -3'
miRNA:   3'- aCGG-GCC-CU--------UGGCuuUGG-CGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 158862 0.73 0.373361
Target:  5'- gGCCgCGGaGGacggcgcgGCCGcgGCCgGCGGGCGCc -3'
miRNA:   3'- aCGG-GCC-CU--------UGGCuuUGG-CGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 85671 0.72 0.389168
Target:  5'- cGCCCGGG-ACCGGcgauAUCGUGuGGCuGCu -3'
miRNA:   3'- aCGGGCCCuUGGCUu---UGGCGC-CCG-CG- -5'
9681 5' -60.7 NC_002577.1 + 108732 0.72 0.389168
Target:  5'- aUGgCCGGGAACCGGGugU-CGGGCa- -3'
miRNA:   3'- -ACgGGCCCUUGGCUUugGcGCCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.