miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9681 5' -60.7 NC_002577.1 + 240 0.67 0.675266
Target:  5'- aGCCgacaguucgCGGGGugCGGcAGcCCGCGGGCu- -3'
miRNA:   3'- aCGG---------GCCCUugGCU-UU-GGCGCCCGcg -5'
9681 5' -60.7 NC_002577.1 + 766 0.68 0.654796
Target:  5'- cGCUCGGGGccggguacaaguuGcCCGGGuCCGCGGGUcugaaGCa -3'
miRNA:   3'- aCGGGCCCU-------------U-GGCUUuGGCGCCCG-----CG- -5'
9681 5' -60.7 NC_002577.1 + 1143 0.7 0.50176
Target:  5'- cGCuuGGGAACCGcGGACCGCaGccuuuGCGUc -3'
miRNA:   3'- aCGggCCCUUGGC-UUUGGCGcC-----CGCG- -5'
9681 5' -60.7 NC_002577.1 + 1175 0.68 0.616635
Target:  5'- cGCcgCCGGGAgacggcggcuucAUCGc-GCaCGCGGGCGCu -3'
miRNA:   3'- aCG--GGCCCU------------UGGCuuUG-GCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 1398 0.69 0.567997
Target:  5'- aGCCCGGG--UCGggGcuaggagcgcCCGCGuGCGCg -3'
miRNA:   3'- aCGGGCCCuuGGCuuU----------GGCGCcCGCG- -5'
9681 5' -60.7 NC_002577.1 + 1567 0.66 0.742066
Target:  5'- gUGCCgCGGauugaGggUCGggGCCGgcgaGGGUGUc -3'
miRNA:   3'- -ACGG-GCC-----CuuGGCuuUGGCg---CCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 3225 0.69 0.58737
Target:  5'- -cUCCGGGA--CGAAggcGCUGCGGaGCGCa -3'
miRNA:   3'- acGGGCCCUugGCUU---UGGCGCC-CGCG- -5'
9681 5' -60.7 NC_002577.1 + 3354 0.66 0.723299
Target:  5'- cGCCgCGGGA--CGAAGCCGCcccGGuaaaguccagacGCGCg -3'
miRNA:   3'- aCGG-GCCCUugGCUUUGGCG---CC------------CGCG- -5'
9681 5' -60.7 NC_002577.1 + 4620 0.71 0.447811
Target:  5'- gGCCgCGGGuacgcgcGCCGAGuAUgGgGGGCGCg -3'
miRNA:   3'- aCGG-GCCCu------UGGCUU-UGgCgCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 7943 0.76 0.251362
Target:  5'- cGCaggGGGAGCgCGGAG-CGCGGGCGCg -3'
miRNA:   3'- aCGgg-CCCUUG-GCUUUgGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 8046 0.68 0.626421
Target:  5'- cGCuCCGGG--CCGGAgagGCUgGCGGGCGg -3'
miRNA:   3'- aCG-GGCCCuuGGCUU---UGG-CGCCCGCg -5'
9681 5' -60.7 NC_002577.1 + 8336 0.66 0.751321
Target:  5'- gGCCUucGGAcGCUuaGAGAgCGCGGGCGUu -3'
miRNA:   3'- aCGGGc-CCU-UGG--CUUUgGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 9038 0.66 0.732722
Target:  5'- cGUaCCGc--GCCGAGGcCCGCGGuGCGCg -3'
miRNA:   3'- aCG-GGCccuUGGCUUU-GGCGCC-CGCG- -5'
9681 5' -60.7 NC_002577.1 + 10503 0.74 0.307773
Target:  5'- -uCCCGaGGuuCCGAccucGCCGCGGGUGCg -3'
miRNA:   3'- acGGGC-CCuuGGCUu---UGGCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 10744 0.7 0.511034
Target:  5'- cGCUCGcGGAACaCGG--UCGCGGGuCGCc -3'
miRNA:   3'- aCGGGC-CCUUG-GCUuuGGCGCCC-GCG- -5'
9681 5' -60.7 NC_002577.1 + 10885 0.71 0.465449
Target:  5'- cGCCCGGcgguaaaaGAAcgaccagaaaauCCGAuccgcGACgGCGGGCGCu -3'
miRNA:   3'- aCGGGCC--------CUU------------GGCU-----UUGgCGCCCGCG- -5'
9681 5' -60.7 NC_002577.1 + 11135 0.7 0.50176
Target:  5'- gGCCCGccguCCGAAAgCGCGGGacCGCg -3'
miRNA:   3'- aCGGGCccuuGGCUUUgGCGCCC--GCG- -5'
9681 5' -60.7 NC_002577.1 + 11244 0.69 0.558369
Target:  5'- cGCgCCGGGGGCUaGAAacGCCGCcccccucccacGGGgGCg -3'
miRNA:   3'- aCG-GGCCCUUGG-CUU--UGGCG-----------CCCgCG- -5'
9681 5' -60.7 NC_002577.1 + 11374 0.66 0.751321
Target:  5'- aGCCCcgucGGGAGcgaucCCGGAucggacGCCGCGGcgaacGCGUa -3'
miRNA:   3'- aCGGG----CCCUU-----GGCUU------UGGCGCC-----CGCG- -5'
9681 5' -60.7 NC_002577.1 + 11594 0.7 0.520378
Target:  5'- gGCCCGgcGGAACgCGAuGCgGCGGGgGa -3'
miRNA:   3'- aCGGGC--CCUUG-GCUuUGgCGCCCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.