miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 5457 0.66 0.994756
Target:  5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3'
miRNA:   3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5'
9683 3' -51 NC_002577.1 + 82856 0.66 0.994756
Target:  5'- cGUAGAaucaAUGAACGCGCuaaagUGgGCg -3'
miRNA:   3'- cCGUCU----UACUUGCGCGucguaACgCG- -5'
9683 3' -51 NC_002577.1 + 128157 0.66 0.994756
Target:  5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3'
miRNA:   3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5'
9683 3' -51 NC_002577.1 + 162302 0.66 0.994002
Target:  5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3'
miRNA:   3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 135026 0.66 0.994002
Target:  5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3'
miRNA:   3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 87139 0.66 0.993914
Target:  5'- cGGCAGAcauAUGGAuCGCuaaGGCAUcuucuguuaaUGCGUg -3'
miRNA:   3'- -CCGUCU---UACUU-GCGcg-UCGUA----------ACGCG- -5'
9683 3' -51 NC_002577.1 + 79074 0.66 0.992966
Target:  5'- cGGCAaaauGGcgGAAUaUGCAGCAUacaGCGCc -3'
miRNA:   3'- -CCGU----CUuaCUUGcGCGUCGUAa--CGCG- -5'
9683 3' -51 NC_002577.1 + 129975 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 68038 0.66 0.992966
Target:  5'- cGGCAG-----GCGCGUGGC--UGUGCa -3'
miRNA:   3'- -CCGUCuuacuUGCGCGUCGuaACGCG- -5'
9683 3' -51 NC_002577.1 + 128984 0.66 0.992966
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUggggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 3638 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 51367 0.66 0.99072
Target:  5'- aGGCAGAucUGAAaguaauCGcCGCGGCAcuUUGCa- -3'
miRNA:   3'- -CCGUCUu-ACUU------GC-GCGUCGU--AACGcg -5'
9683 3' -51 NC_002577.1 + 134228 0.67 0.989403
Target:  5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3'
miRNA:   3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5'
9683 3' -51 NC_002577.1 + 103131 0.67 0.989403
Target:  5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3'
miRNA:   3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5'
9683 3' -51 NC_002577.1 + 122021 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 11593 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 143413 0.67 0.989403
Target:  5'- aGGcCAGAggGAAacucCGCGUccGGCAaaGCGCa -3'
miRNA:   3'- -CC-GUCUuaCUU----GCGCG--UCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 163100 0.67 0.989403
Target:  5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3'
miRNA:   3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5'
9683 3' -51 NC_002577.1 + 102259 0.67 0.989263
Target:  5'- gGGCGGuguggcuAAUGGACGUGuUAGaucUGCGCg -3'
miRNA:   3'- -CCGUC-------UUACUUGCGC-GUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 145295 0.67 0.987944
Target:  5'- aGguGAAUGGAUG-GCGGCAUaccagcuuucauUGcCGCg -3'
miRNA:   3'- cCguCUUACUUGCgCGUCGUA------------AC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.