miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 82092 0.67 0.984566
Target:  5'- uGCAGuuguuACGgGCGGCGgggccUGCGCg -3'
miRNA:   3'- cCGUCuuacuUGCgCGUCGUa----ACGCG- -5'
9683 3' -51 NC_002577.1 + 162076 0.67 0.987944
Target:  5'- gGGCcGGcgGAACccCGCGGCucgGUUGCGUu -3'
miRNA:   3'- -CCGuCUuaCUUGc-GCGUCG---UAACGCG- -5'
9683 3' -51 NC_002577.1 + 122021 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 103131 0.67 0.989403
Target:  5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3'
miRNA:   3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5'
9683 3' -51 NC_002577.1 + 134228 0.67 0.989403
Target:  5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3'
miRNA:   3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5'
9683 3' -51 NC_002577.1 + 102259 0.67 0.989263
Target:  5'- gGGCGGuguggcuAAUGGACGUGuUAGaucUGCGCg -3'
miRNA:   3'- -CCGUC-------UUACUUGCGC-GUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 145295 0.67 0.987944
Target:  5'- aGguGAAUGGAUG-GCGGCAUaccagcuuucauUGcCGCg -3'
miRNA:   3'- cCguCUUACUUGCgCGUCGUA------------AC-GCG- -5'
9683 3' -51 NC_002577.1 + 153640 0.67 0.986335
Target:  5'- gGGCGGGggGAAauaGCGUGGag-UGUGCc -3'
miRNA:   3'- -CCGUCUuaCUUg--CGCGUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 4629 0.67 0.986335
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUgggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa----CGCG- -5'
9683 3' -51 NC_002577.1 + 5715 0.67 0.986335
Target:  5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3'
miRNA:   3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5'
9683 3' -51 NC_002577.1 + 71641 0.67 0.986335
Target:  5'- cGGCAGAAUGGG-GUGCGGagaGgaGCGg -3'
miRNA:   3'- -CCGUCUUACUUgCGCGUCg--UaaCGCg -5'
9683 3' -51 NC_002577.1 + 3223 0.67 0.984566
Target:  5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3'
miRNA:   3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 112755 0.68 0.978209
Target:  5'- aGCGGAguauAUGGucACgGCGCAGC-UUGCGg -3'
miRNA:   3'- cCGUCU----UACU--UG-CGCGUCGuAACGCg -5'
9683 3' -51 NC_002577.1 + 76673 0.68 0.9701
Target:  5'- cGGCAGGGgacuuuUGGucgagaGCGCAGCcgggUGCGUu -3'
miRNA:   3'- -CCGUCUU------ACUug----CGCGUCGua--ACGCG- -5'
9683 3' -51 NC_002577.1 + 40440 0.68 0.978209
Target:  5'- uGCAGGAUGGAgGCGCAuauagagaGCGagaccGCGUa -3'
miRNA:   3'- cCGUCUUACUUgCGCGU--------CGUaa---CGCG- -5'
9683 3' -51 NC_002577.1 + 41244 0.68 0.973011
Target:  5'- cGCAG--UGuauCGCGCAGauUUGCGCg -3'
miRNA:   3'- cCGUCuuACuu-GCGCGUCguAACGCG- -5'
9683 3' -51 NC_002577.1 + 81111 0.68 0.975712
Target:  5'- cGcCAGAAcUGAaauagcucACGCGCuGCAgaGCGCg -3'
miRNA:   3'- cC-GUCUU-ACU--------UGCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 3152 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 130462 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 37692 0.69 0.965322
Target:  5'- cGCAGAAUGGggguuauGCGUaaaGCGGCAgucacggaauagGCGCg -3'
miRNA:   3'- cCGUCUUACU-------UGCG---CGUCGUaa----------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.