miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 133534 1.16 0.003225
Target:  5'- aGGCAGAAUGAACGCGCAGCAUUGCGCg -3'
miRNA:   3'- -CCGUCUUACUUGCGCGUCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 79 1.16 0.003225
Target:  5'- aGGCAGAAUGAACGCGCAGCAUUGCGCg -3'
miRNA:   3'- -CCGUCUUACUUGCGCGUCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 125671 0.81 0.426949
Target:  5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3'
miRNA:   3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 7943 0.81 0.426949
Target:  5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3'
miRNA:   3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 19815 0.8 0.455
Target:  5'- gGGCAGAAaggaGAGCgGCGCGGCAUgguauucgGCGCc -3'
miRNA:   3'- -CCGUCUUa---CUUG-CGCGUCGUAa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 11387 0.77 0.628362
Target:  5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3'
miRNA:   3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5'
9683 3' -51 NC_002577.1 + 122227 0.77 0.628362
Target:  5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3'
miRNA:   3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5'
9683 3' -51 NC_002577.1 + 45861 0.76 0.660084
Target:  5'- gGGCGGAccGuuAUGCGCGGCAUauuggggacuaUGCGCc -3'
miRNA:   3'- -CCGUCUuaCu-UGCGCGUCGUA-----------ACGCG- -5'
9683 3' -51 NC_002577.1 + 113773 0.76 0.670622
Target:  5'- cGGUGGuagGAACGCGCA--AUUGCGCa -3'
miRNA:   3'- -CCGUCuuaCUUGCGCGUcgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 1511 0.75 0.722616
Target:  5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3'
miRNA:   3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 84862 0.75 0.742903
Target:  5'- gGGCGGAAUG-GCGCGUcuuuucAG-AUUGCGCu -3'
miRNA:   3'- -CCGUCUUACuUGCGCG------UCgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 132103 0.75 0.722616
Target:  5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3'
miRNA:   3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 128815 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5'
9683 3' -51 NC_002577.1 + 4798 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5'
9683 3' -51 NC_002577.1 + 141710 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 155628 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 152820 0.72 0.861144
Target:  5'- cGGCAucguAAUGGcACGCGCGGCcc-GCGCu -3'
miRNA:   3'- -CCGUc---UUACU-UGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 46598 0.72 0.883781
Target:  5'- cGGCAGGAUGGggccccucGCGCGCAaucauGgGUUGCuGUa -3'
miRNA:   3'- -CCGUCUUACU--------UGCGCGU-----CgUAACG-CG- -5'
9683 3' -51 NC_002577.1 + 163232 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 134160 0.71 0.919056
Target:  5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3'
miRNA:   3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.