miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 153749 0.71 0.904275
Target:  5'- gGGCAGcuu---CGCGCAGuCGggGCGCg -3'
miRNA:   3'- -CCGUCuuacuuGCGCGUC-GUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 163232 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 134096 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 41031 0.71 0.89769
Target:  5'- aGG-AGAGUGugcCGCGCAGUGUaucgcgcaaaucUGCGCg -3'
miRNA:   3'- -CCgUCUUACuu-GCGCGUCGUA------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 163168 0.71 0.919056
Target:  5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3'
miRNA:   3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 125318 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 155924 0.7 0.938476
Target:  5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3'
miRNA:   3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 159847 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 8296 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 152790 0.7 0.933931
Target:  5'- uGCAGuucaccGAGCGUGCGGCGgcaauuuccaggaccUGCGCg -3'
miRNA:   3'- cCGUCuua---CUUGCGCGUCGUa--------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 81217 0.7 0.938476
Target:  5'- gGGCAGu----GCGCGCGGCAcucaauaGCGUg -3'
miRNA:   3'- -CCGUCuuacuUGCGCGUCGUaa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 141414 0.7 0.938476
Target:  5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3'
miRNA:   3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 143972 0.7 0.922523
Target:  5'- gGGgGGGAUGAauccacggcACGCGCAGCGcuuccuuuacaUUGCa- -3'
miRNA:   3'- -CCgUCUUACU---------UGCGCGUCGU-----------AACGcg -5'
9683 3' -51 NC_002577.1 + 137491 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 3152 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 130462 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 37692 0.69 0.965322
Target:  5'- cGCAGAAUGGggguuauGCGUaaaGCGGCAgucacggaauagGCGCg -3'
miRNA:   3'- cCGUCUUACU-------UGCG---CGUCGUaa----------CGCG- -5'
9683 3' -51 NC_002577.1 + 40440 0.68 0.978209
Target:  5'- uGCAGGAUGGAgGCGCAuauagagaGCGagaccGCGUa -3'
miRNA:   3'- cCGUCUUACUUgCGCGU--------CGUaa---CGCG- -5'
9683 3' -51 NC_002577.1 + 81111 0.68 0.975712
Target:  5'- cGcCAGAAcUGAaauagcucACGCGCuGCAgaGCGCg -3'
miRNA:   3'- cC-GUCUU-ACU--------UGCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 41244 0.68 0.973011
Target:  5'- cGCAG--UGuauCGCGCAGauUUGCGCg -3'
miRNA:   3'- cCGUCuuACuu-GCGCGUCguAACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.