miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 79 1.16 0.003225
Target:  5'- aGGCAGAAUGAACGCGCAGCAUUGCGCg -3'
miRNA:   3'- -CCGUCUUACUUGCGCGUCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 1511 0.75 0.722616
Target:  5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3'
miRNA:   3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 3152 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 3223 0.67 0.984566
Target:  5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3'
miRNA:   3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 3638 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 4629 0.67 0.986335
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUgggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa----CGCG- -5'
9683 3' -51 NC_002577.1 + 4798 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5'
9683 3' -51 NC_002577.1 + 5457 0.66 0.994756
Target:  5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3'
miRNA:   3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5'
9683 3' -51 NC_002577.1 + 5715 0.67 0.986335
Target:  5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3'
miRNA:   3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5'
9683 3' -51 NC_002577.1 + 7943 0.81 0.426949
Target:  5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3'
miRNA:   3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 8296 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 11387 0.77 0.628362
Target:  5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3'
miRNA:   3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5'
9683 3' -51 NC_002577.1 + 11593 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 19815 0.8 0.455
Target:  5'- gGGCAGAAaggaGAGCgGCGCGGCAUgguauucgGCGCc -3'
miRNA:   3'- -CCGUCUUa---CUUG-CGCGUCGUAa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 37692 0.69 0.965322
Target:  5'- cGCAGAAUGGggguuauGCGUaaaGCGGCAgucacggaauagGCGCg -3'
miRNA:   3'- cCGUCUUACU-------UGCG---CGUCGUaa----------CGCG- -5'
9683 3' -51 NC_002577.1 + 40440 0.68 0.978209
Target:  5'- uGCAGGAUGGAgGCGCAuauagagaGCGagaccGCGUa -3'
miRNA:   3'- cCGUCUUACUUgCGCGU--------CGUaa---CGCG- -5'
9683 3' -51 NC_002577.1 + 41031 0.71 0.89769
Target:  5'- aGG-AGAGUGugcCGCGCAGUGUaucgcgcaaaucUGCGCg -3'
miRNA:   3'- -CCgUCUUACuu-GCGCGUCGUA------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 41244 0.68 0.973011
Target:  5'- cGCAG--UGuauCGCGCAGauUUGCGCg -3'
miRNA:   3'- cCGUCuuACuu-GCGCGUCguAACGCG- -5'
9683 3' -51 NC_002577.1 + 45861 0.76 0.660084
Target:  5'- gGGCGGAccGuuAUGCGCGGCAUauuggggacuaUGCGCc -3'
miRNA:   3'- -CCGUCUuaCu-UGCGCGUCGUA-----------ACGCG- -5'
9683 3' -51 NC_002577.1 + 46598 0.72 0.883781
Target:  5'- cGGCAGGAUGGggccccucGCGCGCAaucauGgGUUGCuGUa -3'
miRNA:   3'- -CCGUCUUACU--------UGCGCGU-----CgUAACG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.