miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 51367 0.66 0.99072
Target:  5'- aGGCAGAucUGAAaguaauCGcCGCGGCAcuUUGCa- -3'
miRNA:   3'- -CCGUCUu-ACUU------GC-GCGUCGU--AACGcg -5'
9683 3' -51 NC_002577.1 + 68038 0.66 0.992966
Target:  5'- cGGCAG-----GCGCGUGGC--UGUGCa -3'
miRNA:   3'- -CCGUCuuacuUGCGCGUCGuaACGCG- -5'
9683 3' -51 NC_002577.1 + 71641 0.67 0.986335
Target:  5'- cGGCAGAAUGGG-GUGCGGagaGgaGCGg -3'
miRNA:   3'- -CCGUCUUACUUgCGCGUCg--UaaCGCg -5'
9683 3' -51 NC_002577.1 + 76673 0.68 0.9701
Target:  5'- cGGCAGGGgacuuuUGGucgagaGCGCAGCcgggUGCGUu -3'
miRNA:   3'- -CCGUCUU------ACUug----CGCGUCGua--ACGCG- -5'
9683 3' -51 NC_002577.1 + 79074 0.66 0.992966
Target:  5'- cGGCAaaauGGcgGAAUaUGCAGCAUacaGCGCc -3'
miRNA:   3'- -CCGU----CUuaCUUGcGCGUCGUAa--CGCG- -5'
9683 3' -51 NC_002577.1 + 81111 0.68 0.975712
Target:  5'- cGcCAGAAcUGAaauagcucACGCGCuGCAgaGCGCg -3'
miRNA:   3'- cC-GUCUU-ACU--------UGCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 81217 0.7 0.938476
Target:  5'- gGGCAGu----GCGCGCGGCAcucaauaGCGUg -3'
miRNA:   3'- -CCGUCuuacuUGCGCGUCGUaa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 82092 0.67 0.984566
Target:  5'- uGCAGuuguuACGgGCGGCGgggccUGCGCg -3'
miRNA:   3'- cCGUCuuacuUGCgCGUCGUa----ACGCG- -5'
9683 3' -51 NC_002577.1 + 82856 0.66 0.994756
Target:  5'- cGUAGAaucaAUGAACGCGCuaaagUGgGCg -3'
miRNA:   3'- cCGUCU----UACUUGCGCGucguaACgCG- -5'
9683 3' -51 NC_002577.1 + 84862 0.75 0.742903
Target:  5'- gGGCGGAAUG-GCGCGUcuuuucAG-AUUGCGCu -3'
miRNA:   3'- -CCGUCUUACuUGCGCG------UCgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 87139 0.66 0.993914
Target:  5'- cGGCAGAcauAUGGAuCGCuaaGGCAUcuucuguuaaUGCGUg -3'
miRNA:   3'- -CCGUCU---UACUU-GCGcg-UCGUA----------ACGCG- -5'
9683 3' -51 NC_002577.1 + 102259 0.67 0.989263
Target:  5'- gGGCGGuguggcuAAUGGACGUGuUAGaucUGCGCg -3'
miRNA:   3'- -CCGUC-------UUACUUGCGC-GUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 102461 0.67 0.986335
Target:  5'- cGGCGcGcAAUGcGCGCGCGGUAggGCc- -3'
miRNA:   3'- -CCGU-C-UUACuUGCGCGUCGUaaCGcg -5'
9683 3' -51 NC_002577.1 + 102652 0.71 0.915498
Target:  5'- aGGCccuacc-GCGCGC-GCAUUGCGCg -3'
miRNA:   3'- -CCGucuuacuUGCGCGuCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 103131 0.67 0.989403
Target:  5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3'
miRNA:   3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5'
9683 3' -51 NC_002577.1 + 112755 0.68 0.978209
Target:  5'- aGCGGAguauAUGGucACgGCGCAGC-UUGCGg -3'
miRNA:   3'- cCGUCU----UACU--UG-CGCGUCGuAACGCg -5'
9683 3' -51 NC_002577.1 + 113773 0.76 0.670622
Target:  5'- cGGUGGuagGAACGCGCA--AUUGCGCa -3'
miRNA:   3'- -CCGUCuuaCUUGCGCGUcgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 122021 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 122227 0.77 0.628362
Target:  5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3'
miRNA:   3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5'
9683 3' -51 NC_002577.1 + 125318 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.