Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 3' | -51 | NC_002577.1 | + | 125671 | 0.81 | 0.426949 |
Target: 5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3' miRNA: 3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 127898 | 0.67 | 0.986335 |
Target: 5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3' miRNA: 3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 128157 | 0.66 | 0.994756 |
Target: 5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3' miRNA: 3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 128815 | 0.74 | 0.791628 |
Target: 5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3' miRNA: 3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 128984 | 0.66 | 0.992966 |
Target: 5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUggggggGCGCg -3' miRNA: 3'- cCGU-CUUACU----------UGCGCG--UCGUAa-----CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 129975 | 0.66 | 0.992966 |
Target: 5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3' miRNA: 3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 130391 | 0.67 | 0.984566 |
Target: 5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3' miRNA: 3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 130462 | 0.69 | 0.966971 |
Target: 5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3' miRNA: 3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 132103 | 0.75 | 0.722616 |
Target: 5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3' miRNA: 3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 133534 | 1.16 | 0.003225 |
Target: 5'- aGGCAGAAUGAACGCGCAGCAUUGCGCg -3' miRNA: 3'- -CCGUCUUACUUGCGCGUCGUAACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134096 | 0.71 | 0.902326 |
Target: 5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3' miRNA: 3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134160 | 0.71 | 0.919056 |
Target: 5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3' miRNA: 3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134228 | 0.67 | 0.989403 |
Target: 5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3' miRNA: 3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 135026 | 0.66 | 0.994002 |
Target: 5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3' miRNA: 3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 136704 | 0.67 | 0.982628 |
Target: 5'- gGGCGGGA--AAgGCcCGGCGUcGCGCa -3' miRNA: 3'- -CCGUCUUacUUgCGcGUCGUAaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 137491 | 0.7 | 0.922523 |
Target: 5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3' miRNA: 3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 141414 | 0.7 | 0.938476 |
Target: 5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3' miRNA: 3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 141710 | 0.74 | 0.800951 |
Target: 5'- gGGCGGggUGGugGUGguGU--UGgGCg -3' miRNA: 3'- -CCGUCuuACUugCGCguCGuaACgCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 142949 | 0.67 | 0.986335 |
Target: 5'- uGUGGGAccgGGGCGUGCGGCGagcacccaGCGCg -3' miRNA: 3'- cCGUCUUa--CUUGCGCGUCGUaa------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 143413 | 0.67 | 0.989403 |
Target: 5'- aGGcCAGAggGAAacucCGCGUccGGCAaaGCGCa -3' miRNA: 3'- -CC-GUCUuaCUU----GCGCG--UCGUaaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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