miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 163232 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 163168 0.71 0.919056
Target:  5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3'
miRNA:   3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 163100 0.67 0.989403
Target:  5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3'
miRNA:   3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5'
9683 3' -51 NC_002577.1 + 162302 0.66 0.994002
Target:  5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3'
miRNA:   3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 162076 0.67 0.987944
Target:  5'- gGGCcGGcgGAACccCGCGGCucgGUUGCGUu -3'
miRNA:   3'- -CCGuCUuaCUUGc-GCGUCG---UAACGCG- -5'
9683 3' -51 NC_002577.1 + 159847 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 155924 0.7 0.938476
Target:  5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3'
miRNA:   3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 155628 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 153749 0.71 0.904275
Target:  5'- gGGCAGcuu---CGCGCAGuCGggGCGCg -3'
miRNA:   3'- -CCGUCuuacuuGCGCGUC-GUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 153640 0.67 0.986335
Target:  5'- gGGCGGGggGAAauaGCGUGGag-UGUGCc -3'
miRNA:   3'- -CCGUCUuaCUUg--CGCGUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 152820 0.72 0.861144
Target:  5'- cGGCAucguAAUGGcACGCGCGGCcc-GCGCu -3'
miRNA:   3'- -CCGUc---UUACU-UGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 152790 0.7 0.933931
Target:  5'- uGCAGuucaccGAGCGUGCGGCGgcaauuuccaggaccUGCGCg -3'
miRNA:   3'- cCGUCuua---CUUGCGCGUCGUa--------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 145295 0.67 0.987944
Target:  5'- aGguGAAUGGAUG-GCGGCAUaccagcuuucauUGcCGCg -3'
miRNA:   3'- cCguCUUACUUGCgCGUCGUA------------AC-GCG- -5'
9683 3' -51 NC_002577.1 + 143972 0.7 0.922523
Target:  5'- gGGgGGGAUGAauccacggcACGCGCAGCGcuuccuuuacaUUGCa- -3'
miRNA:   3'- -CCgUCUUACU---------UGCGCGUCGU-----------AACGcg -5'
9683 3' -51 NC_002577.1 + 143413 0.67 0.989403
Target:  5'- aGGcCAGAggGAAacucCGCGUccGGCAaaGCGCa -3'
miRNA:   3'- -CC-GUCUuaCUU----GCGCG--UCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 142949 0.67 0.986335
Target:  5'- uGUGGGAccgGGGCGUGCGGCGagcacccaGCGCg -3'
miRNA:   3'- cCGUCUUa--CUUGCGCGUCGUaa------CGCG- -5'
9683 3' -51 NC_002577.1 + 141710 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 141414 0.7 0.938476
Target:  5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3'
miRNA:   3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 137491 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 136704 0.67 0.982628
Target:  5'- gGGCGGGA--AAgGCcCGGCGUcGCGCa -3'
miRNA:   3'- -CCGUCUUacUUgCGcGUCGUAaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.