miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 135026 0.66 0.994002
Target:  5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3'
miRNA:   3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 134228 0.67 0.989403
Target:  5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3'
miRNA:   3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5'
9683 3' -51 NC_002577.1 + 134160 0.71 0.919056
Target:  5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3'
miRNA:   3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 134096 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 133534 1.16 0.003225
Target:  5'- aGGCAGAAUGAACGCGCAGCAUUGCGCg -3'
miRNA:   3'- -CCGUCUUACUUGCGCGUCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 132103 0.75 0.722616
Target:  5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3'
miRNA:   3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 130462 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 130391 0.67 0.984566
Target:  5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3'
miRNA:   3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 129975 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 128984 0.66 0.992966
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUggggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 128815 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5'
9683 3' -51 NC_002577.1 + 128157 0.66 0.994756
Target:  5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3'
miRNA:   3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5'
9683 3' -51 NC_002577.1 + 127898 0.67 0.986335
Target:  5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3'
miRNA:   3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5'
9683 3' -51 NC_002577.1 + 125671 0.81 0.426949
Target:  5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3'
miRNA:   3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 125318 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 122227 0.77 0.628362
Target:  5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3'
miRNA:   3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5'
9683 3' -51 NC_002577.1 + 122021 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 113773 0.76 0.670622
Target:  5'- cGGUGGuagGAACGCGCA--AUUGCGCa -3'
miRNA:   3'- -CCGUCuuaCUUGCGCGUcgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 112755 0.68 0.978209
Target:  5'- aGCGGAguauAUGGucACgGCGCAGC-UUGCGg -3'
miRNA:   3'- cCGUCU----UACU--UG-CGCGUCGuAACGCg -5'
9683 3' -51 NC_002577.1 + 103131 0.67 0.989403
Target:  5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3'
miRNA:   3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.