miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 130462 0.69 0.966971
Target:  5'- uGGaCGGAGacUGGGCGCGaAGCGUucUGCGg -3'
miRNA:   3'- -CC-GUCUU--ACUUGCGCgUCGUA--ACGCg -5'
9683 3' -51 NC_002577.1 + 46598 0.72 0.883781
Target:  5'- cGGCAGGAUGGggccccucGCGCGCAaucauGgGUUGCuGUa -3'
miRNA:   3'- -CCGUCUUACU--------UGCGCGU-----CgUAACG-CG- -5'
9683 3' -51 NC_002577.1 + 129975 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 162076 0.67 0.987944
Target:  5'- gGGCcGGcgGAACccCGCGGCucgGUUGCGUu -3'
miRNA:   3'- -CCGuCUuaCUUGc-GCGUCG---UAACGCG- -5'
9683 3' -51 NC_002577.1 + 76673 0.68 0.9701
Target:  5'- cGGCAGGGgacuuuUGGucgagaGCGCAGCcgggUGCGUu -3'
miRNA:   3'- -CCGUCUU------ACUug----CGCGUCGua--ACGCG- -5'
9683 3' -51 NC_002577.1 + 155628 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 102461 0.67 0.986335
Target:  5'- cGGCGcGcAAUGcGCGCGCGGUAggGCc- -3'
miRNA:   3'- -CCGU-C-UUACuUGCGCGUCGUaaCGcg -5'
9683 3' -51 NC_002577.1 + 128815 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5'
9683 3' -51 NC_002577.1 + 84862 0.75 0.742903
Target:  5'- gGGCGGAAUG-GCGCGUcuuuucAG-AUUGCGCu -3'
miRNA:   3'- -CCGUCUUACuUGCGCG------UCgUAACGCG- -5'
9683 3' -51 NC_002577.1 + 141414 0.7 0.938476
Target:  5'- gGGCGGAuggGGACcaGCGCAGgGa-GCGCg -3'
miRNA:   3'- -CCGUCUua-CUUG--CGCGUCgUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 112755 0.68 0.978209
Target:  5'- aGCGGAguauAUGGucACgGCGCAGC-UUGCGg -3'
miRNA:   3'- cCGUCU----UACU--UG-CGCGUCGuAACGCg -5'
9683 3' -51 NC_002577.1 + 82856 0.66 0.994756
Target:  5'- cGUAGAaucaAUGAACGCGCuaaagUGgGCg -3'
miRNA:   3'- cCGUCU----UACUUGCGCGucguaACgCG- -5'
9683 3' -51 NC_002577.1 + 130391 0.67 0.984566
Target:  5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3'
miRNA:   3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 143413 0.67 0.989403
Target:  5'- aGGcCAGAggGAAacucCGCGUccGGCAaaGCGCa -3'
miRNA:   3'- -CC-GUCUuaCUU----GCGCG--UCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 128984 0.66 0.992966
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUggggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 87139 0.66 0.993914
Target:  5'- cGGCAGAcauAUGGAuCGCuaaGGCAUcuucuguuaaUGCGUg -3'
miRNA:   3'- -CCGUCU---UACUU-GCGcg-UCGUA----------ACGCG- -5'
9683 3' -51 NC_002577.1 + 37692 0.69 0.965322
Target:  5'- cGCAGAAUGGggguuauGCGUaaaGCGGCAgucacggaauagGCGCg -3'
miRNA:   3'- cCGUCUUACU-------UGCG---CGUCGUaa----------CGCG- -5'
9683 3' -51 NC_002577.1 + 41031 0.71 0.89769
Target:  5'- aGG-AGAGUGugcCGCGCAGUGUaucgcgcaaaucUGCGCg -3'
miRNA:   3'- -CCgUCUUACuu-GCGCGUCGUA------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 137491 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 4798 0.74 0.791628
Target:  5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3'
miRNA:   3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.