miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 3' -51 NC_002577.1 + 4629 0.67 0.986335
Target:  5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUgggggGCGCg -3'
miRNA:   3'- cCGU-CUUACU----------UGCGCG--UCGUAa----CGCG- -5'
9683 3' -51 NC_002577.1 + 3638 0.66 0.992966
Target:  5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3'
miRNA:   3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 122021 0.67 0.989403
Target:  5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3'
miRNA:   3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5'
9683 3' -51 NC_002577.1 + 153640 0.67 0.986335
Target:  5'- gGGCGGGggGAAauaGCGUGGag-UGUGCc -3'
miRNA:   3'- -CCGUCUuaCUUg--CGCGUCguaACGCG- -5'
9683 3' -51 NC_002577.1 + 103131 0.67 0.989403
Target:  5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3'
miRNA:   3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5'
9683 3' -51 NC_002577.1 + 1511 0.75 0.722616
Target:  5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3'
miRNA:   3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5'
9683 3' -51 NC_002577.1 + 5715 0.67 0.986335
Target:  5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3'
miRNA:   3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5'
9683 3' -51 NC_002577.1 + 71641 0.67 0.986335
Target:  5'- cGGCAGAAUGGG-GUGCGGagaGgaGCGg -3'
miRNA:   3'- -CCGUCUUACUUgCGCGUCg--UaaCGCg -5'
9683 3' -51 NC_002577.1 + 3223 0.67 0.984566
Target:  5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3'
miRNA:   3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 141710 0.74 0.800951
Target:  5'- gGGCGGggUGGugGUGguGU--UGgGCg -3'
miRNA:   3'- -CCGUCuuACUugCGCguCGuaACgCG- -5'
9683 3' -51 NC_002577.1 + 152820 0.72 0.861144
Target:  5'- cGGCAucguAAUGGcACGCGCGGCcc-GCGCu -3'
miRNA:   3'- -CCGUc---UUACU-UGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 163232 0.71 0.902326
Target:  5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3'
miRNA:   3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5'
9683 3' -51 NC_002577.1 + 153749 0.71 0.904275
Target:  5'- gGGCAGcuu---CGCGCAGuCGggGCGCg -3'
miRNA:   3'- -CCGUCuuacuuGCGCGUC-GUaaCGCG- -5'
9683 3' -51 NC_002577.1 + 102652 0.71 0.915498
Target:  5'- aGGCccuacc-GCGCGC-GCAUUGCGCg -3'
miRNA:   3'- -CCGucuuacuUGCGCGuCGUAACGCG- -5'
9683 3' -51 NC_002577.1 + 159847 0.7 0.922523
Target:  5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3'
miRNA:   3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5'
9683 3' -51 NC_002577.1 + 134160 0.71 0.919056
Target:  5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3'
miRNA:   3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 8296 0.7 0.922523
Target:  5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3'
miRNA:   3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5'
9683 3' -51 NC_002577.1 + 152790 0.7 0.933931
Target:  5'- uGCAGuucaccGAGCGUGCGGCGgcaauuuccaggaccUGCGCg -3'
miRNA:   3'- cCGUCuua---CUUGCGCGUCGUa--------------ACGCG- -5'
9683 3' -51 NC_002577.1 + 81217 0.7 0.938476
Target:  5'- gGGCAGu----GCGCGCGGCAcucaauaGCGUg -3'
miRNA:   3'- -CCGUCuuacuUGCGCGUCGUaa-----CGCG- -5'
9683 3' -51 NC_002577.1 + 40440 0.68 0.978209
Target:  5'- uGCAGGAUGGAgGCGCAuauagagaGCGagaccGCGUa -3'
miRNA:   3'- cCGUCUUACUUgCGCGU--------CGUaa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.