Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 3' | -51 | NC_002577.1 | + | 45861 | 0.76 | 0.660084 |
Target: 5'- gGGCGGAccGuuAUGCGCGGCAUauuggggacuaUGCGCc -3' miRNA: 3'- -CCGUCUuaCu-UGCGCGUCGUA-----------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 1511 | 0.75 | 0.722616 |
Target: 5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3' miRNA: 3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 4798 | 0.74 | 0.791628 |
Target: 5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3' miRNA: 3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 152820 | 0.72 | 0.861144 |
Target: 5'- cGGCAucguAAUGGcACGCGCGGCcc-GCGCu -3' miRNA: 3'- -CCGUc---UUACU-UGCGCGUCGuaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 163232 | 0.71 | 0.902326 |
Target: 5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3' miRNA: 3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 141710 | 0.74 | 0.800951 |
Target: 5'- gGGCGGggUGGugGUGguGU--UGgGCg -3' miRNA: 3'- -CCGUCuuACUugCGCguCGuaACgCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 153749 | 0.71 | 0.904275 |
Target: 5'- gGGCAGcuu---CGCGCAGuCGggGCGCg -3' miRNA: 3'- -CCGUCuuacuuGCGCGUC-GUaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 102652 | 0.71 | 0.915498 |
Target: 5'- aGGCccuacc-GCGCGC-GCAUUGCGCg -3' miRNA: 3'- -CCGucuuacuUGCGCGuCGUAACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134160 | 0.71 | 0.919056 |
Target: 5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3' miRNA: 3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 159847 | 0.7 | 0.922523 |
Target: 5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3' miRNA: 3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 8296 | 0.7 | 0.922523 |
Target: 5'- uGCGGcGUuuaGGCGCGCAGCg--GCGCg -3' miRNA: 3'- cCGUCuUAc--UUGCGCGUCGuaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 152790 | 0.7 | 0.933931 |
Target: 5'- uGCAGuucaccGAGCGUGCGGCGgcaauuuccaggaccUGCGCg -3' miRNA: 3'- cCGUCuua---CUUGCGCGUCGUa--------------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 81217 | 0.7 | 0.938476 |
Target: 5'- gGGCAGu----GCGCGCGGCAcucaauaGCGUg -3' miRNA: 3'- -CCGUCuuacuUGCGCGUCGUaa-----CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 5457 | 0.66 | 0.994756 |
Target: 5'- aGGUAGAGgcgucGGAUGCGgGGCGaUGaGCg -3' miRNA: 3'- -CCGUCUUa----CUUGCGCgUCGUaACgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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