Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 3' | -51 | NC_002577.1 | + | 135026 | 0.66 | 0.994002 |
Target: 5'- cGGUAGAGaaaguuucguaaaagGAAgacCGCGCGGCGacaGCGCc -3' miRNA: 3'- -CCGUCUUa--------------CUU---GCGCGUCGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 3638 | 0.66 | 0.992966 |
Target: 5'- cGGCGGAcUGcaGGCGaagaaGUAGCcggGCGCg -3' miRNA: 3'- -CCGUCUuAC--UUGCg----CGUCGuaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 51367 | 0.66 | 0.99072 |
Target: 5'- aGGCAGAucUGAAaguaauCGcCGCGGCAcuUUGCa- -3' miRNA: 3'- -CCGUCUu-ACUU------GC-GCGUCGU--AACGcg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 122021 | 0.67 | 0.989403 |
Target: 5'- cGGCccGGcgGAACGCgauGCGGCGggggaaaagGCGCc -3' miRNA: 3'- -CCGu-CUuaCUUGCG---CGUCGUaa-------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 103131 | 0.67 | 0.989403 |
Target: 5'- uGCAGAucGUGGugACGCGCcGUAUggGCGg -3' miRNA: 3'- cCGUCU--UACU--UGCGCGuCGUAa-CGCg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134228 | 0.67 | 0.989403 |
Target: 5'- aGGCcgcccGGA---AAUGCGUAGCGgacccgUGCGCg -3' miRNA: 3'- -CCG-----UCUuacUUGCGCGUCGUa-----ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 102259 | 0.67 | 0.989263 |
Target: 5'- gGGCGGuguggcuAAUGGACGUGuUAGaucUGCGCg -3' miRNA: 3'- -CCGUC-------UUACUUGCGC-GUCguaACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 145295 | 0.67 | 0.987944 |
Target: 5'- aGguGAAUGGAUG-GCGGCAUaccagcuuucauUGcCGCg -3' miRNA: 3'- cCguCUUACUUGCgCGUCGUA------------AC-GCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 41244 | 0.68 | 0.973011 |
Target: 5'- cGCAG--UGuauCGCGCAGauUUGCGCg -3' miRNA: 3'- cCGUCuuACuu-GCGCGUCguAACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 40440 | 0.68 | 0.978209 |
Target: 5'- uGCAGGAUGGAgGCGCAuauagagaGCGagaccGCGUa -3' miRNA: 3'- cCGUCUUACUUgCGCGU--------CGUaa---CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 3223 | 0.67 | 0.984566 |
Target: 5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3' miRNA: 3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 71641 | 0.67 | 0.986335 |
Target: 5'- cGGCAGAAUGGG-GUGCGGagaGgaGCGg -3' miRNA: 3'- -CCGUCUUACUUgCGCGUCg--UaaCGCg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 5715 | 0.67 | 0.986335 |
Target: 5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3' miRNA: 3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 4629 | 0.67 | 0.986335 |
Target: 5'- uGCAgGGAUGGccgcggguacGCGCGCcgAGUAUgggggGCGCg -3' miRNA: 3'- cCGU-CUUACU----------UGCGCG--UCGUAa----CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 153640 | 0.67 | 0.986335 |
Target: 5'- gGGCGGGggGAAauaGCGUGGag-UGUGCc -3' miRNA: 3'- -CCGUCUuaCUUg--CGCGUCguaACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 82856 | 0.66 | 0.994756 |
Target: 5'- cGUAGAaucaAUGAACGCGCuaaagUGgGCg -3' miRNA: 3'- cCGUCU----UACUUGCGCGucguaACgCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 7943 | 0.81 | 0.426949 |
Target: 5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3' miRNA: 3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 19815 | 0.8 | 0.455 |
Target: 5'- gGGCAGAAaggaGAGCgGCGCGGCAUgguauucgGCGCc -3' miRNA: 3'- -CCGUCUUa---CUUG-CGCGUCGUAa-------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 122227 | 0.77 | 0.628362 |
Target: 5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3' miRNA: 3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 113773 | 0.76 | 0.670622 |
Target: 5'- cGGUGGuagGAACGCGCA--AUUGCGCa -3' miRNA: 3'- -CCGUCuuaCUUGCGCGUcgUAACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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