Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 3' | -51 | NC_002577.1 | + | 76673 | 0.68 | 0.9701 |
Target: 5'- cGGCAGGGgacuuuUGGucgagaGCGCAGCcgggUGCGUu -3' miRNA: 3'- -CCGUCUU------ACUug----CGCGUCGua--ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 112755 | 0.68 | 0.978209 |
Target: 5'- aGCGGAguauAUGGucACgGCGCAGC-UUGCGg -3' miRNA: 3'- cCGUCU----UACU--UG-CGCGUCGuAACGCg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 136704 | 0.67 | 0.982628 |
Target: 5'- gGGCGGGA--AAgGCcCGGCGUcGCGCa -3' miRNA: 3'- -CCGUCUUacUUgCGcGUCGUAaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 82092 | 0.67 | 0.984566 |
Target: 5'- uGCAGuuguuACGgGCGGCGgggccUGCGCg -3' miRNA: 3'- cCGUCuuacuUGCgCGUCGUa----ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 130391 | 0.67 | 0.984566 |
Target: 5'- -cCGGGAcGAAgGCGCuGCGgaGCGCa -3' miRNA: 3'- ccGUCUUaCUUgCGCGuCGUaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 127898 | 0.67 | 0.986335 |
Target: 5'- uGGCAucuGAGUG-GCGCGUAGcCGUUGUc- -3' miRNA: 3'- -CCGU---CUUACuUGCGCGUC-GUAACGcg -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 142949 | 0.67 | 0.986335 |
Target: 5'- uGUGGGAccgGGGCGUGCGGCGagcacccaGCGCg -3' miRNA: 3'- cCGUCUUa--CUUGCGCGUCGUaa------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 137491 | 0.7 | 0.922523 |
Target: 5'- cGGCAGGGauguccGGACGCGCGG----GCGCg -3' miRNA: 3'- -CCGUCUUa-----CUUGCGCGUCguaaCGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 163168 | 0.71 | 0.919056 |
Target: 5'- cGGCGGAcccuagcGAgcauGCGCGCGGCGgacccuagcgagcaUGCGCg -3' miRNA: 3'- -CCGUCUua-----CU----UGCGCGUCGUa-------------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 7943 | 0.81 | 0.426949 |
Target: 5'- cGCAGGggGAGCGCGgAGCGcggGCGCg -3' miRNA: 3'- cCGUCUuaCUUGCGCgUCGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 19815 | 0.8 | 0.455 |
Target: 5'- gGGCAGAAaggaGAGCgGCGCGGCAUgguauucgGCGCc -3' miRNA: 3'- -CCGUCUUa---CUUG-CGCGUCGUAa-------CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 122227 | 0.77 | 0.628362 |
Target: 5'- aGCGGGGcGAACGCGuCAGCGUU-CGCa -3' miRNA: 3'- cCGUCUUaCUUGCGC-GUCGUAAcGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 113773 | 0.76 | 0.670622 |
Target: 5'- cGGUGGuagGAACGCGCA--AUUGCGCa -3' miRNA: 3'- -CCGUCuuaCUUGCGCGUcgUAACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 132103 | 0.75 | 0.722616 |
Target: 5'- cGGCGG-AUGuGCGCGCAuGCGcucGCGCg -3' miRNA: 3'- -CCGUCuUACuUGCGCGU-CGUaa-CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 84862 | 0.75 | 0.742903 |
Target: 5'- gGGCGGAAUG-GCGCGUcuuuucAG-AUUGCGCu -3' miRNA: 3'- -CCGUCUUACuUGCGCG------UCgUAACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 128815 | 0.74 | 0.791628 |
Target: 5'- cGuCGGAcgGGACgGCGCGGCGUcgucGCGCg -3' miRNA: 3'- cC-GUCUuaCUUG-CGCGUCGUAa---CGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 155628 | 0.74 | 0.800951 |
Target: 5'- gGGCGGggUGGugGUGguGU--UGgGCg -3' miRNA: 3'- -CCGUCuuACUugCGCguCGuaACgCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 46598 | 0.72 | 0.883781 |
Target: 5'- cGGCAGGAUGGggccccucGCGCGCAaucauGgGUUGCuGUa -3' miRNA: 3'- -CCGUCUUACU--------UGCGCGU-----CgUAACG-CG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 41031 | 0.71 | 0.89769 |
Target: 5'- aGG-AGAGUGugcCGCGCAGUGUaucgcgcaaaucUGCGCg -3' miRNA: 3'- -CCgUCUUACuu-GCGCGUCGUA------------ACGCG- -5' |
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9683 | 3' | -51 | NC_002577.1 | + | 134096 | 0.71 | 0.902326 |
Target: 5'- cGGCgGGGAUGcAGCGUGCGGCucggccuacuggccGCGCg -3' miRNA: 3'- -CCG-UCUUAC-UUGCGCGUCGuaa-----------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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