miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 5' -55 NC_002577.1 + 58612 0.66 0.932064
Target:  5'- -cGCGCGuuGCCugGGACUUUaGCUCu -3'
miRNA:   3'- uuCGUGUggUGGugUCUGAGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 11237 0.66 0.930509
Target:  5'- gGGGCuagaaACGCCGCCccccucccacggggGCGGAUUCgggGACCUc -3'
miRNA:   3'- -UUCG-----UGUGGUGG--------------UGUCUGAGa--CUGGG- -5'
9683 5' -55 NC_002577.1 + 122377 0.66 0.930509
Target:  5'- gGGGCuagaaACGCCGCCccccucccacggggGCGGAUUCgggGACCUc -3'
miRNA:   3'- -UUCG-----UGUGGUGG--------------UGUCUGAGa--CUGGG- -5'
9683 5' -55 NC_002577.1 + 158217 0.66 0.926796
Target:  5'- cGGgACGCC-CCACGG-CUCUcGuCCCg -3'
miRNA:   3'- uUCgUGUGGuGGUGUCuGAGA-CuGGG- -5'
9683 5' -55 NC_002577.1 + 48486 0.66 0.926796
Target:  5'- cGGCGCAugagUCGCCGCGgGACUgCgUGAUCCa -3'
miRNA:   3'- uUCGUGU----GGUGGUGU-CUGA-G-ACUGGG- -5'
9683 5' -55 NC_002577.1 + 32746 0.66 0.926796
Target:  5'- --aUAgGCCGCCGCAGACgacCUGGCg- -3'
miRNA:   3'- uucGUgUGGUGGUGUCUGa--GACUGgg -5'
9683 5' -55 NC_002577.1 + 139121 0.66 0.926796
Target:  5'- cGGgACGCC-CCACGG-CUCUcGuCCCg -3'
miRNA:   3'- uUCgUGUGGuGGUGUCuGAGA-CuGGG- -5'
9683 5' -55 NC_002577.1 + 139536 0.66 0.921282
Target:  5'- -uGCGCGCCGCCGcCGGGCgcggGuacuCCCu -3'
miRNA:   3'- uuCGUGUGGUGGU-GUCUGaga-Cu---GGG- -5'
9683 5' -55 NC_002577.1 + 157801 0.66 0.921282
Target:  5'- -uGCGCGCCGCCGcCGGGCgcggGuacuCCCu -3'
miRNA:   3'- uuCGUGUGGUGGU-GUCUGaga-Cu---GGG- -5'
9683 5' -55 NC_002577.1 + 91427 0.66 0.915524
Target:  5'- gGAG-ACGCCAUUGCAGGCUCUaAUCUg -3'
miRNA:   3'- -UUCgUGUGGUGGUGUCUGAGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 48025 0.67 0.909522
Target:  5'- ---aAgACCACC-CGGACUCgguacaGACCCa -3'
miRNA:   3'- uucgUgUGGUGGuGUCUGAGa-----CUGGG- -5'
9683 5' -55 NC_002577.1 + 108683 0.67 0.909522
Target:  5'- -cGCACAgCGCU-CAGGCUC-GACCg -3'
miRNA:   3'- uuCGUGUgGUGGuGUCUGAGaCUGGg -5'
9683 5' -55 NC_002577.1 + 14 0.67 0.903279
Target:  5'- cAGCcuccCGCCGCCACAGgugcACUCa-GCCCg -3'
miRNA:   3'- uUCGu---GUGGUGGUGUC----UGAGacUGGG- -5'
9683 5' -55 NC_002577.1 + 133599 0.67 0.903279
Target:  5'- cAGCcuccCGCCGCCACAGgugcACUCa-GCCCg -3'
miRNA:   3'- uUCGu---GUGGUGGUGUC----UGAGacUGGG- -5'
9683 5' -55 NC_002577.1 + 44302 0.67 0.896135
Target:  5'- uGGCGCGuuaCACCAUGGGCUUuuaaugaUGGCCUa -3'
miRNA:   3'- uUCGUGUg--GUGGUGUCUGAG-------ACUGGG- -5'
9683 5' -55 NC_002577.1 + 786 0.67 0.890077
Target:  5'- gGAGCGCACgACgAUGGGCUCccGCCUu -3'
miRNA:   3'- -UUCGUGUGgUGgUGUCUGAGacUGGG- -5'
9683 5' -55 NC_002577.1 + 145106 0.67 0.890077
Target:  5'- cGGCACACCgACCACAGGCccaUUUG-CUUu -3'
miRNA:   3'- uUCGUGUGG-UGGUGUCUG---AGACuGGG- -5'
9683 5' -55 NC_002577.1 + 132828 0.67 0.890077
Target:  5'- gGAGCGCACgACgAUGGGCUCccGCCUu -3'
miRNA:   3'- -UUCGUGUGgUGgUGUCUGAGacUGGG- -5'
9683 5' -55 NC_002577.1 + 133242 0.67 0.883125
Target:  5'- gAGGCccuaACCGCCACcguaaacGGCcCUGGCCCa -3'
miRNA:   3'- -UUCGug--UGGUGGUGu------CUGaGACUGGG- -5'
9683 5' -55 NC_002577.1 + 372 0.67 0.883125
Target:  5'- gAGGCccuaACCGCCACcguaaacGGCcCUGGCCCa -3'
miRNA:   3'- -UUCGug--UGGUGGUGu------CUGaGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.