miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 5' -55 NC_002577.1 + 158534 0.68 0.860921
Target:  5'- cGGCGCGCCaaucaaguaugGCUuuguACAGAggUCUGACCCg -3'
miRNA:   3'- uUCGUGUGG-----------UGG----UGUCUg-AGACUGGG- -5'
9683 5' -55 NC_002577.1 + 138803 0.68 0.860921
Target:  5'- cGGCGCGCCaaucaaguaugGCUuuguACAGAggUCUGACCCg -3'
miRNA:   3'- uUCGUGUGG-----------UGG----UGUCUg-AGACUGGG- -5'
9683 5' -55 NC_002577.1 + 34305 0.68 0.845051
Target:  5'- gAAGCACuuCCAUCAguGAU--UGGCCCa -3'
miRNA:   3'- -UUCGUGu-GGUGGUguCUGagACUGGG- -5'
9683 5' -55 NC_002577.1 + 138308 0.68 0.836815
Target:  5'- cGGC-CGCgGCCGCGGcCUCUGGCa- -3'
miRNA:   3'- uUCGuGUGgUGGUGUCuGAGACUGgg -5'
9683 5' -55 NC_002577.1 + 159030 0.68 0.836815
Target:  5'- cGGC-CGCgGCCGCGGcCUCUGGCa- -3'
miRNA:   3'- uUCGuGUGgUGGUGUCuGAGACUGgg -5'
9683 5' -55 NC_002577.1 + 159358 0.69 0.819778
Target:  5'- -cGCACAUCGCCGCcagcGugUCUauGACUCg -3'
miRNA:   3'- uuCGUGUGGUGGUGu---CugAGA--CUGGG- -5'
9683 5' -55 NC_002577.1 + 137980 0.69 0.819778
Target:  5'- -cGCACAUCGCCGCcagcGugUCUauGACUCg -3'
miRNA:   3'- uuCGUGUGGUGGUGu---CugAGA--CUGGG- -5'
9683 5' -55 NC_002577.1 + 106246 0.69 0.802043
Target:  5'- cGGCGauagAUCGCCGgGGcguCUCUGACCCg -3'
miRNA:   3'- uUCGUg---UGGUGGUgUCu--GAGACUGGG- -5'
9683 5' -55 NC_002577.1 + 87449 0.69 0.802043
Target:  5'- aGAGCAUcuGCCGCCAUAGcauACga-GACCCg -3'
miRNA:   3'- -UUCGUG--UGGUGGUGUC---UGagaCUGGG- -5'
9683 5' -55 NC_002577.1 + 73615 0.7 0.755107
Target:  5'- -cGCuuuCGCUACCACuGcaACUCUGACCa -3'
miRNA:   3'- uuCGu--GUGGUGGUGuC--UGAGACUGGg -5'
9683 5' -55 NC_002577.1 + 46646 0.7 0.735488
Target:  5'- cGGCAauaucuaACCACCugAGACUgaGAgCCa -3'
miRNA:   3'- uUCGUg------UGGUGGugUCUGAgaCUgGG- -5'
9683 5' -55 NC_002577.1 + 81593 0.71 0.695222
Target:  5'- cAGUacgaGCACUGCCGCAGAguuaUCUGGCCUc -3'
miRNA:   3'- uUCG----UGUGGUGGUGUCUg---AGACUGGG- -5'
9683 5' -55 NC_002577.1 + 131726 0.71 0.695222
Target:  5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3'
miRNA:   3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 1888 0.71 0.695222
Target:  5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3'
miRNA:   3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 152879 0.71 0.694202
Target:  5'- cGAGCaaugacgACGCCGCuCGCGGugUaaGACCCg -3'
miRNA:   3'- -UUCG-------UGUGGUG-GUGUCugAgaCUGGG- -5'
9683 5' -55 NC_002577.1 + 17222 0.72 0.674726
Target:  5'- uGAGcCGCGCCGCCAC--GCUUUuaGACCCa -3'
miRNA:   3'- -UUC-GUGUGGUGGUGucUGAGA--CUGGG- -5'
9683 5' -55 NC_002577.1 + 41208 0.73 0.600259
Target:  5'- cGGCACACUcuccuauggcauCCGCGGACUCUcccgucagGGCCCg -3'
miRNA:   3'- uUCGUGUGGu-----------GGUGUCUGAGA--------CUGGG- -5'
9683 5' -55 NC_002577.1 + 163206 0.73 0.571473
Target:  5'- cGAGCAUGCgCGCgGCGGACcCUGGCCa -3'
miRNA:   3'- -UUCGUGUG-GUGgUGUCUGaGACUGGg -5'
9683 5' -55 NC_002577.1 + 134122 0.73 0.571473
Target:  5'- cGAGCAUGCgCGCgGCGGACcCUGGCCa -3'
miRNA:   3'- -UUCGUGUG-GUGgUGUCUGaGACUGGg -5'
9683 5' -55 NC_002577.1 + 88973 0.77 0.382722
Target:  5'- cAGCACACCugC-CGGACgg-GACCCa -3'
miRNA:   3'- uUCGUGUGGugGuGUCUGagaCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.