miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9683 5' -55 NC_002577.1 + 131726 0.71 0.695222
Target:  5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3'
miRNA:   3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 122377 0.66 0.930509
Target:  5'- gGGGCuagaaACGCCGCCccccucccacggggGCGGAUUCgggGACCUc -3'
miRNA:   3'- -UUCG-----UGUGGUGG--------------UGUCUGAGa--CUGGG- -5'
9683 5' -55 NC_002577.1 + 108683 0.67 0.909522
Target:  5'- -cGCACAgCGCU-CAGGCUC-GACCg -3'
miRNA:   3'- uuCGUGUgGUGGuGUCUGAGaCUGGg -5'
9683 5' -55 NC_002577.1 + 106246 0.69 0.802043
Target:  5'- cGGCGauagAUCGCCGgGGcguCUCUGACCCg -3'
miRNA:   3'- uUCGUg---UGGUGGUgUCu--GAGACUGGG- -5'
9683 5' -55 NC_002577.1 + 91427 0.66 0.915524
Target:  5'- gGAG-ACGCCAUUGCAGGCUCUaAUCUg -3'
miRNA:   3'- -UUCgUGUGGUGGUGUCUGAGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 88973 0.77 0.382722
Target:  5'- cAGCACACCugC-CGGACgg-GACCCa -3'
miRNA:   3'- uUCGUGUGGugGuGUCUGagaCUGGG- -5'
9683 5' -55 NC_002577.1 + 87449 0.69 0.802043
Target:  5'- aGAGCAUcuGCCGCCAUAGcauACga-GACCCg -3'
miRNA:   3'- -UUCGUG--UGGUGGUGUC---UGagaCUGGG- -5'
9683 5' -55 NC_002577.1 + 81593 0.71 0.695222
Target:  5'- cAGUacgaGCACUGCCGCAGAguuaUCUGGCCUc -3'
miRNA:   3'- uUCG----UGUGGUGGUGUCUg---AGACUGGG- -5'
9683 5' -55 NC_002577.1 + 73615 0.7 0.755107
Target:  5'- -cGCuuuCGCUACCACuGcaACUCUGACCa -3'
miRNA:   3'- uuCGu--GUGGUGGUGuC--UGAGACUGGg -5'
9683 5' -55 NC_002577.1 + 58612 0.66 0.932064
Target:  5'- -cGCGCGuuGCCugGGACUUUaGCUCu -3'
miRNA:   3'- uuCGUGUggUGGugUCUGAGAcUGGG- -5'
9683 5' -55 NC_002577.1 + 48486 0.66 0.926796
Target:  5'- cGGCGCAugagUCGCCGCGgGACUgCgUGAUCCa -3'
miRNA:   3'- uUCGUGU----GGUGGUGU-CUGA-G-ACUGGG- -5'
9683 5' -55 NC_002577.1 + 48025 0.67 0.909522
Target:  5'- ---aAgACCACC-CGGACUCgguacaGACCCa -3'
miRNA:   3'- uucgUgUGGUGGuGUCUGAGa-----CUGGG- -5'
9683 5' -55 NC_002577.1 + 46646 0.7 0.735488
Target:  5'- cGGCAauaucuaACCACCugAGACUgaGAgCCa -3'
miRNA:   3'- uUCGUg------UGGUGGugUCUGAgaCUgGG- -5'
9683 5' -55 NC_002577.1 + 44302 0.67 0.896135
Target:  5'- uGGCGCGuuaCACCAUGGGCUUuuaaugaUGGCCUa -3'
miRNA:   3'- uUCGUGUg--GUGGUGUCUGAG-------ACUGGG- -5'
9683 5' -55 NC_002577.1 + 41208 0.73 0.600259
Target:  5'- cGGCACACUcuccuauggcauCCGCGGACUCUcccgucagGGCCCg -3'
miRNA:   3'- uUCGUGUGGu-----------GGUGUCUGAGA--------CUGGG- -5'
9683 5' -55 NC_002577.1 + 34305 0.68 0.845051
Target:  5'- gAAGCACuuCCAUCAguGAU--UGGCCCa -3'
miRNA:   3'- -UUCGUGu-GGUGGUguCUGagACUGGG- -5'
9683 5' -55 NC_002577.1 + 32746 0.66 0.926796
Target:  5'- --aUAgGCCGCCGCAGACgacCUGGCg- -3'
miRNA:   3'- uucGUgUGGUGGUGUCUGa--GACUGgg -5'
9683 5' -55 NC_002577.1 + 17222 0.72 0.674726
Target:  5'- uGAGcCGCGCCGCCAC--GCUUUuaGACCCa -3'
miRNA:   3'- -UUC-GUGUGGUGGUGucUGAGA--CUGGG- -5'
9683 5' -55 NC_002577.1 + 11237 0.66 0.930509
Target:  5'- gGGGCuagaaACGCCGCCccccucccacggggGCGGAUUCgggGACCUc -3'
miRNA:   3'- -UUCG-----UGUGGUGG--------------UGUCUGAGa--CUGGG- -5'
9683 5' -55 NC_002577.1 + 1888 0.71 0.695222
Target:  5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3'
miRNA:   3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.