Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 5' | -55 | NC_002577.1 | + | 48025 | 0.67 | 0.909522 |
Target: 5'- ---aAgACCACC-CGGACUCgguacaGACCCa -3' miRNA: 3'- uucgUgUGGUGGuGUCUGAGa-----CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 786 | 0.67 | 0.890077 |
Target: 5'- gGAGCGCACgACgAUGGGCUCccGCCUu -3' miRNA: 3'- -UUCGUGUGgUGgUGUCUGAGacUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 163206 | 0.73 | 0.571473 |
Target: 5'- cGAGCAUGCgCGCgGCGGACcCUGGCCa -3' miRNA: 3'- -UUCGUGUG-GUGgUGUCUGaGACUGGg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 131726 | 0.71 | 0.695222 |
Target: 5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3' miRNA: 3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 44302 | 0.67 | 0.896135 |
Target: 5'- uGGCGCGuuaCACCAUGGGCUUuuaaugaUGGCCUa -3' miRNA: 3'- uUCGUGUg--GUGGUGUCUGAG-------ACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 133490 | 1.1 | 0.003113 |
Target: 5'- gAAGCACACCACCACAGACUCUGACCCu -3' miRNA: 3'- -UUCGUGUGGUGGUGUCUGAGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 133599 | 0.67 | 0.903279 |
Target: 5'- cAGCcuccCGCCGCCACAGgugcACUCa-GCCCg -3' miRNA: 3'- uUCGu---GUGGUGGUGUC----UGAGacUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 132828 | 0.67 | 0.890077 |
Target: 5'- gGAGCGCACgACgAUGGGCUCccGCCUu -3' miRNA: 3'- -UUCGUGUGgUGgUGUCUGAGacUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 145106 | 0.67 | 0.890077 |
Target: 5'- cGGCACACCgACCACAGGCccaUUUG-CUUu -3' miRNA: 3'- uUCGUGUGG-UGGUGUCUG---AGACuGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 133242 | 0.67 | 0.883125 |
Target: 5'- gAGGCccuaACCGCCACcguaaacGGCcCUGGCCCa -3' miRNA: 3'- -UUCGug--UGGUGGUGu------CUGaGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 158534 | 0.68 | 0.860921 |
Target: 5'- cGGCGCGCCaaucaaguaugGCUuuguACAGAggUCUGACCCg -3' miRNA: 3'- uUCGUGUGG-----------UGG----UGUCUg-AGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 159030 | 0.68 | 0.836815 |
Target: 5'- cGGC-CGCgGCCGCGGcCUCUGGCa- -3' miRNA: 3'- uUCGuGUGgUGGUGUCuGAGACUGgg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 137980 | 0.69 | 0.819778 |
Target: 5'- -cGCACAUCGCCGCcagcGugUCUauGACUCg -3' miRNA: 3'- uuCGUGUGGUGGUGu---CugAGA--CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 87449 | 0.69 | 0.802043 |
Target: 5'- aGAGCAUcuGCCGCCAUAGcauACga-GACCCg -3' miRNA: 3'- -UUCGUG--UGGUGGUGUC---UGagaCUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 46646 | 0.7 | 0.735488 |
Target: 5'- cGGCAauaucuaACCACCugAGACUgaGAgCCa -3' miRNA: 3'- uUCGUg------UGGUGGugUCUGAgaCUgGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 81593 | 0.71 | 0.695222 |
Target: 5'- cAGUacgaGCACUGCCGCAGAguuaUCUGGCCUc -3' miRNA: 3'- uUCG----UGUGGUGGUGUCUg---AGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 17222 | 0.72 | 0.674726 |
Target: 5'- uGAGcCGCGCCGCCAC--GCUUUuaGACCCa -3' miRNA: 3'- -UUC-GUGUGGUGGUGucUGAGA--CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 41208 | 0.73 | 0.600259 |
Target: 5'- cGGCACACUcuccuauggcauCCGCGGACUCUcccgucagGGCCCg -3' miRNA: 3'- uUCGUGUGGu-----------GGUGUCUGAGA--------CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 134122 | 0.73 | 0.571473 |
Target: 5'- cGAGCAUGCgCGCgGCGGACcCUGGCCa -3' miRNA: 3'- -UUCGUGUG-GUGgUGUCUGaGACUGGg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 138152 | 0.8 | 0.271081 |
Target: 5'- uGGGCGCACCACgGCAaGCUCUcGCCCa -3' miRNA: 3'- -UUCGUGUGGUGgUGUcUGAGAcUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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