Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9683 | 5' | -55 | NC_002577.1 | + | 133242 | 0.67 | 0.883125 |
Target: 5'- gAGGCccuaACCGCCACcguaaacGGCcCUGGCCCa -3' miRNA: 3'- -UUCGug--UGGUGGUGu------CUGaGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 138803 | 0.68 | 0.860921 |
Target: 5'- cGGCGCGCCaaucaaguaugGCUuuguACAGAggUCUGACCCg -3' miRNA: 3'- uUCGUGUGG-----------UGG----UGUCUg-AGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 372 | 0.67 | 0.883125 |
Target: 5'- gAGGCccuaACCGCCACcguaaacGGCcCUGGCCCa -3' miRNA: 3'- -UUCGug--UGGUGGUGu------CUGaGACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 786 | 0.67 | 0.890077 |
Target: 5'- gGAGCGCACgACgAUGGGCUCccGCCUu -3' miRNA: 3'- -UUCGUGUGgUGgUGUCUGAGacUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 14 | 0.67 | 0.903279 |
Target: 5'- cAGCcuccCGCCGCCACAGgugcACUCa-GCCCg -3' miRNA: 3'- uUCGu---GUGGUGGUGUC----UGAGacUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 48025 | 0.67 | 0.909522 |
Target: 5'- ---aAgACCACC-CGGACUCgguacaGACCCa -3' miRNA: 3'- uucgUgUGGUGGuGUCUGAGa-----CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 108683 | 0.67 | 0.909522 |
Target: 5'- -cGCACAgCGCU-CAGGCUC-GACCg -3' miRNA: 3'- uuCGUGUgGUGGuGUCUGAGaCUGGg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 91427 | 0.66 | 0.915524 |
Target: 5'- gGAG-ACGCCAUUGCAGGCUCUaAUCUg -3' miRNA: 3'- -UUCgUGUGGUGGUGUCUGAGAcUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 157801 | 0.66 | 0.921282 |
Target: 5'- -uGCGCGCCGCCGcCGGGCgcggGuacuCCCu -3' miRNA: 3'- uuCGUGUGGUGGU-GUCUGaga-Cu---GGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 34305 | 0.68 | 0.845051 |
Target: 5'- gAAGCACuuCCAUCAguGAU--UGGCCCa -3' miRNA: 3'- -UUCGUGu-GGUGGUguCUGagACUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 138308 | 0.68 | 0.836815 |
Target: 5'- cGGC-CGCgGCCGCGGcCUCUGGCa- -3' miRNA: 3'- uUCGuGUGgUGGUGUCuGAGACUGgg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 159358 | 0.69 | 0.819778 |
Target: 5'- -cGCACAUCGCCGCcagcGugUCUauGACUCg -3' miRNA: 3'- uuCGUGUGGUGGUGu---CugAGA--CUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 58612 | 0.66 | 0.932064 |
Target: 5'- -cGCGCGuuGCCugGGACUUUaGCUCu -3' miRNA: 3'- uuCGUGUggUGGugUCUGAGAcUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 159186 | 0.8 | 0.271081 |
Target: 5'- uGGGCGCACCACgGCAaGCUCUcGCCCa -3' miRNA: 3'- -UUCGUGUGGUGgUGUcUGAGAcUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 88973 | 0.77 | 0.382722 |
Target: 5'- cAGCACACCugC-CGGACgg-GACCCa -3' miRNA: 3'- uUCGUGUGGugGuGUCUGagaCUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 163206 | 0.73 | 0.571473 |
Target: 5'- cGAGCAUGCgCGCgGCGGACcCUGGCCa -3' miRNA: 3'- -UUCGUGUG-GUGgUGUCUGaGACUGGg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 152879 | 0.71 | 0.694202 |
Target: 5'- cGAGCaaugacgACGCCGCuCGCGGugUaaGACCCg -3' miRNA: 3'- -UUCG-------UGUGGUG-GUGUCugAgaCUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 1888 | 0.71 | 0.695222 |
Target: 5'- uAAGCcaaACGCCGCCugAGACcCUaACCCc -3' miRNA: 3'- -UUCG---UGUGGUGGugUCUGaGAcUGGG- -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 73615 | 0.7 | 0.755107 |
Target: 5'- -cGCuuuCGCUACCACuGcaACUCUGACCa -3' miRNA: 3'- uuCGu--GUGGUGGUGuC--UGAGACUGGg -5' |
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9683 | 5' | -55 | NC_002577.1 | + | 106246 | 0.69 | 0.802043 |
Target: 5'- cGGCGauagAUCGCCGgGGcguCUCUGACCCg -3' miRNA: 3'- uUCGUg---UGGUGGUgUCu--GAGACUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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