miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9684 3' -59.3 NC_002577.1 + 132627 1.1 0.001467
Target:  5'- cCCCCCCCCCGUAGAUUCCAUGGCCGAg -3'
miRNA:   3'- -GGGGGGGGGCAUCUAAGGUACCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 987 1.02 0.005742
Target:  5'- cCCCCCCCCCGU-GAUUCCAUGGCCGAg -3'
miRNA:   3'- -GGGGGGGGGCAuCUAAGGUACCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 163144 0.72 0.465374
Target:  5'- cCCCCCCCCCG-AGAc-CCA-GGgCGAc -3'
miRNA:   3'- -GGGGGGGGGCaUCUaaGGUaCCgGCU- -5'
9684 3' -59.3 NC_002577.1 + 134184 0.72 0.465374
Target:  5'- cCCCCCCCCCG-AGAc-CCA-GGgCGAc -3'
miRNA:   3'- -GGGGGGGGGCaUCUaaGGUaCCgGCU- -5'
9684 3' -59.3 NC_002577.1 + 1803 0.72 0.492673
Target:  5'- cCCCCCCCCCGagUAGggUUag-GGCCu- -3'
miRNA:   3'- -GGGGGGGGGC--AUCuaAGguaCCGGcu -5'
9684 3' -59.3 NC_002577.1 + 131810 0.72 0.492673
Target:  5'- cCCCCCCCCCGagUAGggUUag-GGCCu- -3'
miRNA:   3'- -GGGGGGGGGC--AUCuaAGguaCCGGcu -5'
9684 3' -59.3 NC_002577.1 + 1677 0.7 0.588156
Target:  5'- cCCCCUCCCCGUcaGGGUUag--GGCCu- -3'
miRNA:   3'- -GGGGGGGGGCA--UCUAAgguaCCGGcu -5'
9684 3' -59.3 NC_002577.1 + 131936 0.7 0.588156
Target:  5'- cCCCCUCCCCGUcaGGGUUag--GGCCu- -3'
miRNA:   3'- -GGGGGGGGGCA--UCUAAgguaCCGGcu -5'
9684 3' -59.3 NC_002577.1 + 128632 0.69 0.637338
Target:  5'- gCCCCCCUCCGaGGGUagcacgCgGUGGUCGc -3'
miRNA:   3'- -GGGGGGGGGCaUCUAa-----GgUACCGGCu -5'
9684 3' -59.3 NC_002577.1 + 3702 0.69 0.637338
Target:  5'- cCCCCCCCCCacaUAGGaaccucugUUCCAUcGCCa- -3'
miRNA:   3'- -GGGGGGGGGc--AUCU--------AAGGUAcCGGcu -5'
9684 3' -59.3 NC_002577.1 + 4982 0.69 0.637338
Target:  5'- gCCCCCCUCCGaGGGUagcacgCgGUGGUCGc -3'
miRNA:   3'- -GGGGGGGGGCaUCUAa-----GgUACCGGCu -5'
9684 3' -59.3 NC_002577.1 + 129912 0.69 0.637338
Target:  5'- cCCCCCCCCCacaUAGGaaccucugUUCCAUcGCCa- -3'
miRNA:   3'- -GGGGGGGGGc--AUCU--------AAGGUAcCGGcu -5'
9684 3' -59.3 NC_002577.1 + 126003 0.69 0.64128
Target:  5'- cCCCCCCCCCGcgcuuucucguUUCCGccgugGGCCa- -3'
miRNA:   3'- -GGGGGGGGGCaucu-------AAGGUa----CCGGcu -5'
9684 3' -59.3 NC_002577.1 + 127139 0.68 0.686416
Target:  5'- cCCCCCCCCCacgccucucGAcucuuuuuuuuUUCCAUgGGCCGu -3'
miRNA:   3'- -GGGGGGGGGcau------CU-----------AAGGUA-CCGGCu -5'
9684 3' -59.3 NC_002577.1 + 140339 0.68 0.686416
Target:  5'- uCCCCCCCUCGagaAGAgcucagUUgGUGGCCc- -3'
miRNA:   3'- -GGGGGGGGGCa--UCUa-----AGgUACCGGcu -5'
9684 3' -59.3 NC_002577.1 + 6475 0.68 0.686416
Target:  5'- cCCCCCCCCCacgccucucGAcucuuuuuuuuUUCCAUgGGCCGu -3'
miRNA:   3'- -GGGGGGGGGcau------CU-----------AAGGUA-CCGGCu -5'
9684 3' -59.3 NC_002577.1 + 139193 0.68 0.696138
Target:  5'- gCUCCCUCCCGcgcuUUCCGcGGCCGu -3'
miRNA:   3'- -GGGGGGGGGCaucuAAGGUaCCGGCu -5'
9684 3' -59.3 NC_002577.1 + 158145 0.68 0.696138
Target:  5'- gCUCCCUCCCGcgcuUUCCGcGGCCGu -3'
miRNA:   3'- -GGGGGGGGGCaucuAAGGUaCCGGCu -5'
9684 3' -59.3 NC_002577.1 + 7610 0.68 0.700013
Target:  5'- cCCCCCCCCCGcgcuuucucguUUCCccgugGGCCa- -3'
miRNA:   3'- -GGGGGGGGGCaucu-------AAGGua---CCGGcu -5'
9684 3' -59.3 NC_002577.1 + 156998 0.68 0.724972
Target:  5'- uCCCCCCCUCGagaAGAgcucgagUUgGUGGCCc- -3'
miRNA:   3'- -GGGGGGGGGCa--UCUa------AGgUACCGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.