Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 1020 | 1.13 | 0.007992 |
Target: 5'- aCACCGGCUUUUUGGAAUUUCGCGGGGg -3' miRNA: 3'- -GUGGCCGAAAAACCUUAAAGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 4637 | 0.67 | 0.996885 |
Target: 5'- gGCCGcGCUgca-GGGAUggcCGCGGGu -3' miRNA: 3'- gUGGC-CGAaaaaCCUUAaa-GCGCCCc -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 6449 | 0.68 | 0.993257 |
Target: 5'- gGCCGGCUUg--GGAAaugUCaGCGGa- -3' miRNA: 3'- gUGGCCGAAaaaCCUUaa-AG-CGCCcc -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 6761 | 0.68 | 0.991086 |
Target: 5'- -uCgGGCgagugGGAAUgggcaUCGCGGGGu -3' miRNA: 3'- guGgCCGaaaaaCCUUAa----AGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 11696 | 0.72 | 0.944784 |
Target: 5'- gGCCGGCcugcagUUcgGGAAga--GCGGGGg -3' miRNA: 3'- gUGGCCGa-----AAaaCCUUaaagCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 14565 | 0.68 | 0.989812 |
Target: 5'- gACCGGCUcc--GGAugAUUguguuaGCGGGGa -3' miRNA: 3'- gUGGCCGAaaaaCCU--UAAag----CGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 26479 | 0.67 | 0.997542 |
Target: 5'- uUACUGGCUg--UGGAAcgaaacUaagcgggaaacagauUUCGUGGGGu -3' miRNA: 3'- -GUGGCCGAaaaACCUU------A---------------AAGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 39295 | 0.68 | 0.993257 |
Target: 5'- aACCGGU-----GGAGg--UGCGGGGg -3' miRNA: 3'- gUGGCCGaaaaaCCUUaaaGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 43495 | 0.7 | 0.976507 |
Target: 5'- uCAUCGGCUUc--GGggUUUauaaGgGGGGg -3' miRNA: 3'- -GUGGCCGAAaaaCCuuAAAg---CgCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 72530 | 0.78 | 0.664021 |
Target: 5'- aACCGGUg--UUGGAGg--CGUGGGGg -3' miRNA: 3'- gUGGCCGaaaAACCUUaaaGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 106136 | 0.65 | 0.998927 |
Target: 5'- uGCCGGUgaugcgaugcgagUUagUGGAAga--GCGGGGu -3' miRNA: 3'- gUGGCCG-------------AAaaACCUUaaagCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 121917 | 0.72 | 0.944785 |
Target: 5'- gGCCGGCcugcagUUcgGGAAga--GCGGGGg -3' miRNA: 3'- gUGGCCGa-----AAaaCCUUaaagCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 126852 | 0.68 | 0.991086 |
Target: 5'- -uCgGGCgagugGGAAUgggcaUCGCGGGGu -3' miRNA: 3'- guGgCCGaaaaaCCUUAa----AGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 127165 | 0.68 | 0.993257 |
Target: 5'- gGCCGGCUUg--GGAAaugUCaGCGGa- -3' miRNA: 3'- gUGGCCGAAaaaCCUUaa-AG-CGCCcc -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 128976 | 0.67 | 0.996885 |
Target: 5'- gGCCGcGCUgca-GGGAUggcCGCGGGu -3' miRNA: 3'- gUGGC-CGAaaaaCCUUAaa-GCGCCCc -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 132593 | 1.13 | 0.007992 |
Target: 5'- aCACCGGCUUUUUGGAAUUUCGCGGGGg -3' miRNA: 3'- -GUGGCCGAAAAACCUUAAAGCGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 134080 | 0.66 | 0.998457 |
Target: 5'- gGCCGGCg----GGcAUgUCcgGCGGGGa -3' miRNA: 3'- gUGGCCGaaaaaCCuUAaAG--CGCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 134395 | 0.72 | 0.932511 |
Target: 5'- uGCCGGCggcggcagGGggUUUCGgucgcccugggucuCGGGGg -3' miRNA: 3'- gUGGCCGaaaaa---CCuuAAAGC--------------GCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 135439 | 0.66 | 0.997786 |
Target: 5'- gACUGGCUgggcgUGcGGA--UCGgGGGGg -3' miRNA: 3'- gUGGCCGAaaa--AC-CUUaaAGCgCCCC- -5' |
|||||||
9684 | 5' | -49.7 | NC_002577.1 | + | 135769 | 0.69 | 0.985121 |
Target: 5'- uCGCCGGCcgcg-GGGuUUUCGCGGcGa -3' miRNA: 3'- -GUGGCCGaaaaaCCUuAAAGCGCC-Cc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home