miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9685 3' -50.4 NC_002577.1 + 2427 1.13 0.005634
Target:  5'- cCUGCCCCUAAAGACCUAAGCAUGACCu -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 131187 1.13 0.005634
Target:  5'- cCUGCCCCUAAAGACCUAAGCAUGACCu -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 2074 0.87 0.210379
Target:  5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 131539 0.87 0.210379
Target:  5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 2113 0.85 0.298259
Target:  5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 131500 0.85 0.298259
Target:  5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 131310 0.78 0.580483
Target:  5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5'
9685 3' -50.4 NC_002577.1 + 2304 0.78 0.580483
Target:  5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5'
9685 3' -50.4 NC_002577.1 + 141949 0.77 0.633548
Target:  5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3'
miRNA:   3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5'
9685 3' -50.4 NC_002577.1 + 155389 0.77 0.633548
Target:  5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3'
miRNA:   3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5'
9685 3' -50.4 NC_002577.1 + 131227 0.76 0.707506
Target:  5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5'
9685 3' -50.4 NC_002577.1 + 2387 0.76 0.707506
Target:  5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5'
9685 3' -50.4 NC_002577.1 + 153580 0.71 0.936972
Target:  5'- gCUGCCCCguuuAGGCaaacgGGGCccGGCCg -3'
miRNA:   3'- -GACGGGGauu-UCUGga---UUCGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 131469 0.7 0.950948
Target:  5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3'
miRNA:   3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 2144 0.7 0.950948
Target:  5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3'
miRNA:   3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 91864 0.69 0.972306
Target:  5'- -aGCCCCUGAAcGCCUAuGCccaugGAUCu -3'
miRNA:   3'- gaCGGGGAUUUcUGGAUuCGua---CUGG- -5'
9685 3' -50.4 NC_002577.1 + 161009 0.69 0.975074
Target:  5'- uCUGCCUaccggAGAGcgccGCCUGGGCG-GGCCg -3'
miRNA:   3'- -GACGGGga---UUUC----UGGAUUCGUaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 133027 0.69 0.975074
Target:  5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3'
miRNA:   3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5'
9685 3' -50.4 NC_002577.1 + 587 0.69 0.975074
Target:  5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3'
miRNA:   3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5'
9685 3' -50.4 NC_002577.1 + 135118 0.67 0.990473
Target:  5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3'
miRNA:   3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.