Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9685 | 3' | -50.4 | NC_002577.1 | + | 81699 | 0.67 | 0.99169 |
Target: 5'- -gGCCgCUAGAGACCUuucuAGCucucgcACCa -3' miRNA: 3'- gaCGGgGAUUUCUGGAu---UCGuac---UGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 106241 | 0.67 | 0.99169 |
Target: 5'- -cGCCCCggcgauAGAUCgccgGGGCGucucUGACCc -3' miRNA: 3'- gaCGGGGauu---UCUGGa---UUCGU----ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 135118 | 0.67 | 0.990473 |
Target: 5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3' miRNA: 3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 162210 | 0.67 | 0.990473 |
Target: 5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3' miRNA: 3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 143713 | 0.67 | 0.990473 |
Target: 5'- uUGCCUCUGAu--CCUGGGCGgu-CCg -3' miRNA: 3'- gACGGGGAUUucuGGAUUCGUacuGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 587 | 0.69 | 0.975074 |
Target: 5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3' miRNA: 3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 161009 | 0.69 | 0.975074 |
Target: 5'- uCUGCCUaccggAGAGcgccGCCUGGGCG-GGCCg -3' miRNA: 3'- -GACGGGga---UUUC----UGGAUUCGUaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 133027 | 0.69 | 0.975074 |
Target: 5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3' miRNA: 3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 91864 | 0.69 | 0.972306 |
Target: 5'- -aGCCCCUGAAcGCCUAuGCccaugGAUCu -3' miRNA: 3'- gaCGGGGAUUUcUGGAUuCGua---CUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2144 | 0.7 | 0.950948 |
Target: 5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3' miRNA: 3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131469 | 0.7 | 0.950948 |
Target: 5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3' miRNA: 3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 153580 | 0.71 | 0.936972 |
Target: 5'- gCUGCCCCguuuAGGCaaacgGGGCccGGCCg -3' miRNA: 3'- -GACGGGGauu-UCUGga---UUCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2387 | 0.76 | 0.707506 |
Target: 5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3' miRNA: 3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131227 | 0.76 | 0.707506 |
Target: 5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3' miRNA: 3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 155389 | 0.77 | 0.633548 |
Target: 5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3' miRNA: 3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 141949 | 0.77 | 0.633548 |
Target: 5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3' miRNA: 3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131310 | 0.78 | 0.580483 |
Target: 5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2304 | 0.78 | 0.580483 |
Target: 5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2113 | 0.85 | 0.298259 |
Target: 5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131500 | 0.85 | 0.298259 |
Target: 5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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