miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9685 3' -50.4 NC_002577.1 + 587 0.69 0.975074
Target:  5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3'
miRNA:   3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5'
9685 3' -50.4 NC_002577.1 + 2074 0.87 0.210379
Target:  5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 2113 0.85 0.298259
Target:  5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 2144 0.7 0.950948
Target:  5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3'
miRNA:   3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 2273 0.66 0.993753
Target:  5'- -cGaCCCCUAAAcGCCUAAcCAcGACCc -3'
miRNA:   3'- gaC-GGGGAUUUcUGGAUUcGUaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 2304 0.78 0.580483
Target:  5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5'
9685 3' -50.4 NC_002577.1 + 2339 0.66 0.994618
Target:  5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3'
miRNA:   3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 2387 0.76 0.707506
Target:  5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5'
9685 3' -50.4 NC_002577.1 + 2427 1.13 0.005634
Target:  5'- cCUGCCCCUAAAGACCUAAGCAUGACCu -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 11068 0.67 0.99278
Target:  5'- -aGCCCCcGGcgcGGGCCgcGGCcgGACa -3'
miRNA:   3'- gaCGGGGaUU---UCUGGauUCGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 23763 0.66 0.995089
Target:  5'- -gGCCCCUAuaAAGGuCCUcaucgggaaacgcGaugaggauaguaaaAGCAUGGCCg -3'
miRNA:   3'- gaCGGGGAU--UUCU-GGA-------------U--------------UCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 41541 0.67 0.99214
Target:  5'- -cGCUCCUAuaagaggagucGAGGCCacgUGucgcggcccaacagaAGCGUGACCg -3'
miRNA:   3'- gaCGGGGAU-----------UUCUGG---AU---------------UCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 51328 0.66 0.993753
Target:  5'- uUGCCCCgagcacGGACCccGGCAcGugCu -3'
miRNA:   3'- gACGGGGauu---UCUGGauUCGUaCugG- -5'
9685 3' -50.4 NC_002577.1 + 78969 0.66 0.996649
Target:  5'- -aGCCCUcc--GGCCUAAGCcugaGGCCc -3'
miRNA:   3'- gaCGGGGauuuCUGGAUUCGua--CUGG- -5'
9685 3' -50.4 NC_002577.1 + 81699 0.67 0.99169
Target:  5'- -gGCCgCUAGAGACCUuucuAGCucucgcACCa -3'
miRNA:   3'- gaCGGgGAUUUCUGGAu---UCGuac---UGG- -5'
9685 3' -50.4 NC_002577.1 + 87912 0.66 0.995383
Target:  5'- aUGUCCUUuuGGACC-GAGUguuuuGUGGCCc -3'
miRNA:   3'- gACGGGGAuuUCUGGaUUCG-----UACUGG- -5'
9685 3' -50.4 NC_002577.1 + 91864 0.69 0.972306
Target:  5'- -aGCCCCUGAAcGCCUAuGCccaugGAUCu -3'
miRNA:   3'- gaCGGGGAUUUcUGGAUuCGua---CUGG- -5'
9685 3' -50.4 NC_002577.1 + 100002 0.66 0.996058
Target:  5'- aUG-CCCUAccGACUgUAAGCAgGGCCg -3'
miRNA:   3'- gACgGGGAUuuCUGG-AUUCGUaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 100522 0.66 0.996649
Target:  5'- aUGUCCCUGGAGuCCgguaCAUGuCCu -3'
miRNA:   3'- gACGGGGAUUUCuGGauucGUACuGG- -5'
9685 3' -50.4 NC_002577.1 + 104341 0.66 0.996649
Target:  5'- uCUGCCUCgggAGAGAugcCCUGAGgaGUG-CCg -3'
miRNA:   3'- -GACGGGGa--UUUCU---GGAUUCg-UACuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.