Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9685 | 3' | -50.4 | NC_002577.1 | + | 162210 | 0.67 | 0.990473 |
Target: 5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3' miRNA: 3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 161094 | 0.66 | 0.996649 |
Target: 5'- cCUGuCCCCUcAGGACCUcGGUuuugcgGGCg -3' miRNA: 3'- -GAC-GGGGAuUUCUGGAuUCGua----CUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 161009 | 0.69 | 0.975074 |
Target: 5'- uCUGCCUaccggAGAGcgccGCCUGGGCG-GGCCg -3' miRNA: 3'- -GACGGGga---UUUC----UGGAUUCGUaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 160934 | 0.67 | 0.99278 |
Target: 5'- -cGCCCCccgGGGGACCccGGUucGACCc -3' miRNA: 3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 155389 | 0.77 | 0.633548 |
Target: 5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3' miRNA: 3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 154864 | 0.66 | 0.993473 |
Target: 5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3' miRNA: 3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 153580 | 0.71 | 0.936972 |
Target: 5'- gCUGCCCCguuuAGGCaaacgGGGCccGGCCg -3' miRNA: 3'- -GACGGGGauu-UCUGga---UUCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 150224 | 0.66 | 0.995383 |
Target: 5'- aUGCCUauguagGAAGcACCUcucuGUAUGACCa -3' miRNA: 3'- gACGGGga----UUUC-UGGAuu--CGUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 143713 | 0.67 | 0.990473 |
Target: 5'- uUGCCUCUGAu--CCUGGGCGgu-CCg -3' miRNA: 3'- gACGGGGAUUucuGGAUUCGUacuGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 142473 | 0.66 | 0.993473 |
Target: 5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3' miRNA: 3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 141949 | 0.77 | 0.633548 |
Target: 5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3' miRNA: 3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 136403 | 0.67 | 0.99278 |
Target: 5'- -cGCCCCccgGGGGACCccGGUucGACCc -3' miRNA: 3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 136244 | 0.66 | 0.996649 |
Target: 5'- cCUGuCCCCUcAGGACCUcGGUuuugcgGGCg -3' miRNA: 3'- -GAC-GGGGAuUUCUGGAuUCGua----CUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 135118 | 0.67 | 0.990473 |
Target: 5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3' miRNA: 3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 133027 | 0.69 | 0.975074 |
Target: 5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3' miRNA: 3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131539 | 0.87 | 0.210379 |
Target: 5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131500 | 0.85 | 0.298259 |
Target: 5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131469 | 0.7 | 0.950948 |
Target: 5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3' miRNA: 3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131310 | 0.78 | 0.580483 |
Target: 5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 131275 | 0.66 | 0.994618 |
Target: 5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3' miRNA: 3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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