Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9685 | 3' | -50.4 | NC_002577.1 | + | 2427 | 1.13 | 0.005634 |
Target: 5'- cCUGCCCCUAAAGACCUAAGCAUGACCu -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUCGUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2273 | 0.66 | 0.993753 |
Target: 5'- -cGaCCCCUAAAcGCCUAAcCAcGACCc -3' miRNA: 3'- gaC-GGGGAUUUcUGGAUUcGUaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 23763 | 0.66 | 0.995089 |
Target: 5'- -gGCCCCUAuaAAGGuCCUcaucgggaaacgcGaugaggauaguaaaAGCAUGGCCg -3' miRNA: 3'- gaCGGGGAU--UUCU-GGA-------------U--------------UCGUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 100522 | 0.66 | 0.996649 |
Target: 5'- aUGUCCCUGGAGuCCgguaCAUGuCCu -3' miRNA: 3'- gACGGGGAUUUCuGGauucGUACuGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 155389 | 0.77 | 0.633548 |
Target: 5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3' miRNA: 3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2387 | 0.76 | 0.707506 |
Target: 5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3' miRNA: 3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2144 | 0.7 | 0.950948 |
Target: 5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3' miRNA: 3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 133027 | 0.69 | 0.975074 |
Target: 5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3' miRNA: 3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 162210 | 0.67 | 0.990473 |
Target: 5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3' miRNA: 3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 142473 | 0.66 | 0.993473 |
Target: 5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3' miRNA: 3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 41541 | 0.67 | 0.99214 |
Target: 5'- -cGCUCCUAuaagaggagucGAGGCCacgUGucgcggcccaacagaAGCGUGACCg -3' miRNA: 3'- gaCGGGGAU-----------UUCUGG---AU---------------UCGUACUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 143713 | 0.67 | 0.990473 |
Target: 5'- uUGCCUCUGAu--CCUGGGCGgu-CCg -3' miRNA: 3'- gACGGGGAUUucuGGAUUCGUacuGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2074 | 0.87 | 0.210379 |
Target: 5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 11068 | 0.67 | 0.99278 |
Target: 5'- -aGCCCCcGGcgcGGGCCgcGGCcgGACa -3' miRNA: 3'- gaCGGGGaUU---UCUGGauUCGuaCUGg -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2113 | 0.85 | 0.298259 |
Target: 5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3' miRNA: 3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 161009 | 0.69 | 0.975074 |
Target: 5'- uCUGCCUaccggAGAGcgccGCCUGGGCG-GGCCg -3' miRNA: 3'- -GACGGGga---UUUC----UGGAUUCGUaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 160934 | 0.67 | 0.99278 |
Target: 5'- -cGCCCCccgGGGGACCccGGUucGACCc -3' miRNA: 3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2339 | 0.66 | 0.994618 |
Target: 5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3' miRNA: 3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 2304 | 0.78 | 0.580483 |
Target: 5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3' miRNA: 3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5' |
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9685 | 3' | -50.4 | NC_002577.1 | + | 153580 | 0.71 | 0.936972 |
Target: 5'- gCUGCCCCguuuAGGCaaacgGGGCccGGCCg -3' miRNA: 3'- -GACGGGGauu-UCUGga---UUCGuaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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