miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9685 3' -50.4 NC_002577.1 + 131187 1.13 0.005634
Target:  5'- cCUGCCCCUAAAGACCUAAGCAUGACCu -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUCGUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 587 0.69 0.975074
Target:  5'- -gGCCacaUUAAGGGCUUGGGCcagGGCCg -3'
miRNA:   3'- gaCGGg--GAUUUCUGGAUUCGua-CUGG- -5'
9685 3' -50.4 NC_002577.1 + 91864 0.69 0.972306
Target:  5'- -aGCCCCUGAAcGCCUAuGCccaugGAUCu -3'
miRNA:   3'- gaCGGGGAUUUcUGGAUuCGua---CUGG- -5'
9685 3' -50.4 NC_002577.1 + 131469 0.7 0.950948
Target:  5'- aCUaCCCCUAAAGGCCUAAcCccGACa -3'
miRNA:   3'- -GAcGGGGAUUUCUGGAUUcGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 131227 0.76 0.707506
Target:  5'- cCUGCCCCUAAGGGCCcAAcCAUcACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGaUUcGUAcUGG- -5'
9685 3' -50.4 NC_002577.1 + 141949 0.77 0.633548
Target:  5'- uUGCCCCcGGGGAgCCUAguAGCGcUGACCg -3'
miRNA:   3'- gACGGGGaUUUCU-GGAU--UCGU-ACUGG- -5'
9685 3' -50.4 NC_002577.1 + 131310 0.78 0.580483
Target:  5'- aCUGCCCCUAAAGGCCUAAcccuaaACCa -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcguac-UGG- -5'
9685 3' -50.4 NC_002577.1 + 131500 0.85 0.298259
Target:  5'- uUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- gACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 131539 0.87 0.210379
Target:  5'- cCUGCCCCUAAAGGCCUAAcCccGACCc -3'
miRNA:   3'- -GACGGGGAUUUCUGGAUUcGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 135118 0.67 0.990473
Target:  5'- aUGCCCCgcgcgcACCUucGCccGGCCa -3'
miRNA:   3'- gACGGGGauuuc-UGGAuuCGuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 81699 0.67 0.99169
Target:  5'- -gGCCgCUAGAGACCUuucuAGCucucgcACCa -3'
miRNA:   3'- gaCGGgGAUUUCUGGAu---UCGuac---UGG- -5'
9685 3' -50.4 NC_002577.1 + 122545 0.67 0.99278
Target:  5'- -aGCCCCcGGcgcGGGCCgcGGCcgGACa -3'
miRNA:   3'- gaCGGGGaUU---UCUGGauUCGuaCUGg -5'
9685 3' -50.4 NC_002577.1 + 104341 0.66 0.996649
Target:  5'- uCUGCCUCgggAGAGAugcCCUGAGgaGUG-CCg -3'
miRNA:   3'- -GACGGGGa--UUUCU---GGAUUCg-UACuGG- -5'
9685 3' -50.4 NC_002577.1 + 136244 0.66 0.996649
Target:  5'- cCUGuCCCCUcAGGACCUcGGUuuugcgGGCg -3'
miRNA:   3'- -GAC-GGGGAuUUCUGGAuUCGua----CUGg -5'
9685 3' -50.4 NC_002577.1 + 100002 0.66 0.996058
Target:  5'- aUG-CCCUAccGACUgUAAGCAgGGCCg -3'
miRNA:   3'- gACgGGGAUuuCUGG-AUUCGUaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 87912 0.66 0.995383
Target:  5'- aUGUCCUUuuGGACC-GAGUguuuuGUGGCCc -3'
miRNA:   3'- gACGGGGAuuUCUGGaUUCG-----UACUGG- -5'
9685 3' -50.4 NC_002577.1 + 131275 0.66 0.994618
Target:  5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3'
miRNA:   3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5'
9685 3' -50.4 NC_002577.1 + 51328 0.66 0.993753
Target:  5'- uUGCCCCgagcacGGACCccGGCAcGugCu -3'
miRNA:   3'- gACGGGGauu---UCUGGauUCGUaCugG- -5'
9685 3' -50.4 NC_002577.1 + 154864 0.66 0.993473
Target:  5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3'
miRNA:   3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5'
9685 3' -50.4 NC_002577.1 + 136403 0.67 0.99278
Target:  5'- -cGCCCCccgGGGGACCccGGUucGACCc -3'
miRNA:   3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.