miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9685 5' -52.9 NC_002577.1 + 71664 0.66 0.981329
Target:  5'- aUGGCUUcuAUCGUGGCCUUGGGcGGCa -3'
miRNA:   3'- gAUUGGGacUGGUACUGGGAUUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 163296 0.66 0.981329
Target:  5'- cCUAACCCUaaaGGCCuaacccuaACCCUAAcGGCc -3'
miRNA:   3'- -GAUUGGGA---CUGGuac-----UGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 133459 0.66 0.976506
Target:  5'- aUAGCCCcGACCGUGaaaugagGCCCggcGaGGCc -3'
miRNA:   3'- gAUUGGGaCUGGUAC-------UGGGauuC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 154 0.66 0.976506
Target:  5'- aUAGCCCcGACCGUGaaaugagGCCCggcGaGGCc -3'
miRNA:   3'- gAUUGGGaCUGGUAC-------UGGGauuC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 84136 0.66 0.971407
Target:  5'- uUGGCCUaugUGGCCAUGACCgUGuGGa- -3'
miRNA:   3'- gAUUGGG---ACUGGUACUGGgAUuCCcg -5'
9685 5' -52.9 NC_002577.1 + 123058 0.67 0.968424
Target:  5'- -cGACCCgcGACCGUGuuCCgcGAGcGGCg -3'
miRNA:   3'- gaUUGGGa-CUGGUACugGGa-UUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 10556 0.67 0.968424
Target:  5'- -cGACCCgcGACCGUGuuCCgcGAGcGGCg -3'
miRNA:   3'- gaUUGGGa-CUGGUACugGGa-UUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 480 0.67 0.958165
Target:  5'- -gAACCCccGACCcuaacaGACCCUAucgcGGGGUc -3'
miRNA:   3'- gaUUGGGa-CUGGua----CUGGGAU----UCCCG- -5'
9685 5' -52.9 NC_002577.1 + 133134 0.67 0.958165
Target:  5'- -gAACCCccGACCcuaacaGACCCUAucgcGGGGUc -3'
miRNA:   3'- gaUUGGGa-CUGGua----CUGGGAU----UCCCG- -5'
9685 5' -52.9 NC_002577.1 + 160040 0.67 0.95429
Target:  5'- -cGGCCUUGGCgAUG-CCCUgggucGAGGGa -3'
miRNA:   3'- gaUUGGGACUGgUACuGGGA-----UUCCCg -5'
9685 5' -52.9 NC_002577.1 + 137298 0.67 0.95429
Target:  5'- -cGGCCUUGGCgAUG-CCCUgggucGAGGGa -3'
miRNA:   3'- gaUUGGGACUGgUACuGGGA-----UUCCCg -5'
9685 5' -52.9 NC_002577.1 + 124282 0.67 0.95429
Target:  5'- gCUGGCCCggGGCgCG-GACgcggUCUGAGGGCu -3'
miRNA:   3'- -GAUUGGGa-CUG-GUaCUG----GGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 9332 0.67 0.95429
Target:  5'- gCUGGCCCggGGCgCG-GACgcggUCUGAGGGCu -3'
miRNA:   3'- -GAUUGGGa-CUG-GUaCUG----GGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 163422 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAcGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 163598 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 163811 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 163843 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 163869 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 133746 0.68 0.945828
Target:  5'- cCUAACCCUaACCcuaACCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGAcUGGuacUGGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 132012 0.68 0.945828
Target:  5'- cCUAcCCCUG-CCA-GGCCCUAacccuacucGGGGg -3'
miRNA:   3'- -GAUuGGGACuGGUaCUGGGAU---------UCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.