Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 131153 | 1.11 | 0.004205 |
Target: 5'- cCUAACCCUGACCAUGACCCUAAGGGCc -3' miRNA: 3'- -GAUUGGGACUGGUACUGGGAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 2461 | 1.11 | 0.004205 |
Target: 5'- cCUAACCCUGACCAUGACCCUAAGGGCc -3' miRNA: 3'- -GAUUGGGACUGGUACUGGGAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133778 | 0.79 | 0.395914 |
Target: 5'- cCUAACCCUGACCcuaACCCUAAcGGCc -3' miRNA: 3'- -GAUUGGGACUGGuacUGGGAUUcCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133842 | 0.79 | 0.395914 |
Target: 5'- cCUAACCCUGACCcuaACCCUAAaGGCc -3' miRNA: 3'- -GAUUGGGACUGGuacUGGGAUUcCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 1851 | 0.77 | 0.517257 |
Target: 5'- aUAACCCUGACCuUGACagguCCUAAccccGGGCc -3' miRNA: 3'- gAUUGGGACUGGuACUG----GGAUU----CCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 131763 | 0.77 | 0.517257 |
Target: 5'- aUAACCCUGACCuUGACagguCCUAAccccGGGCc -3' miRNA: 3'- gAUUGGGACUGGuACUG----GGAUU----CCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 395 | 0.77 | 0.537309 |
Target: 5'- -cGGCCCUGGCCcaagcccuuaauGUGGCCCUAAcaGGCa -3' miRNA: 3'- gaUUGGGACUGG------------UACUGGGAUUc-CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133219 | 0.77 | 0.537309 |
Target: 5'- -cGGCCCUGGCCcaagcccuuaauGUGGCCCUAAcaGGCa -3' miRNA: 3'- gaUUGGGACUGG------------UACUGGGAUUc-CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 131563 | 0.72 | 0.777596 |
Target: 5'- cCUAACCCcGACCcUGACCCUAAcccugccccuaaaGGCc -3' miRNA: 3'- -GAUUGGGaCUGGuACUGGGAUUc------------CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 2050 | 0.72 | 0.777596 |
Target: 5'- cCUAACCCcGACCcUGACCCUAAcccugccccuaaaGGCc -3' miRNA: 3'- -GAUUGGGaCUGGuACUGGGAUUc------------CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 41909 | 0.71 | 0.835007 |
Target: 5'- gCUGACCUcugcucucgUGGCCGUcuggaGACCCaccAGGGCg -3' miRNA: 3'- -GAUUGGG---------ACUGGUA-----CUGGGau-UCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 42011 | 0.7 | 0.859362 |
Target: 5'- -aAGCCCUGucuucguggauuACCAUGGCUCUGcaucuAGGGg -3' miRNA: 3'- gaUUGGGAC------------UGGUACUGGGAU-----UCCCg -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 155604 | 0.69 | 0.895632 |
Target: 5'- -gAGCCgUGGCUgugGUGugUgUAGGGGCg -3' miRNA: 3'- gaUUGGgACUGG---UACugGgAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 141734 | 0.69 | 0.895632 |
Target: 5'- -gAGCCgUGGCUgugGUGugUgUAGGGGCg -3' miRNA: 3'- gaUUGGgACUGG---UACugGgAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 2364 | 0.69 | 0.909123 |
Target: 5'- -cGACCC-GACCccuaaacgccuccccUGcCCCUAAGGGCc -3' miRNA: 3'- gaUUGGGaCUGGu--------------ACuGGGAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 131250 | 0.69 | 0.909123 |
Target: 5'- -cGACCC-GACCccuaaacgccuccccUGcCCCUAAGGGCc -3' miRNA: 3'- gaUUGGGaCUGGu--------------ACuGGGAUUCCCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133321 | 0.68 | 0.925435 |
Target: 5'- cCUGACCCcGACUAUGgacuauuacccuaACCCUGAaaGGCc -3' miRNA: 3'- -GAUUGGGaCUGGUAC-------------UGGGAUUc-CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 293 | 0.68 | 0.925435 |
Target: 5'- cCUGACCCcGACUAUGgacuauuacccuaACCCUGAaaGGCc -3' miRNA: 3'- -GAUUGGGaCUGGUAC-------------UGGGAUUc-CCG- -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133988 | 0.68 | 0.925982 |
Target: 5'- cCUAACCCUGACCcuaACCCUAAc--- -3' miRNA: 3'- -GAUUGGGACUGGuacUGGGAUUcccg -5' |
|||||||
9685 | 5' | -52.9 | NC_002577.1 | + | 133958 | 0.68 | 0.925982 |
Target: 5'- cCUAACCCUGACCcuaACCCUAAc--- -3' miRNA: 3'- -GAUUGGGACUGGuacUGGGAUUcccg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home