miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9685 5' -52.9 NC_002577.1 + 154 0.66 0.976506
Target:  5'- aUAGCCCcGACCGUGaaaugagGCCCggcGaGGCc -3'
miRNA:   3'- gAUUGGGaCUGGUAC-------UGGGauuC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 293 0.68 0.925435
Target:  5'- cCUGACCCcGACUAUGgacuauuacccuaACCCUGAaaGGCc -3'
miRNA:   3'- -GAUUGGGaCUGGUAC-------------UGGGAUUc-CCG- -5'
9685 5' -52.9 NC_002577.1 + 395 0.77 0.537309
Target:  5'- -cGGCCCUGGCCcaagcccuuaauGUGGCCCUAAcaGGCa -3'
miRNA:   3'- gaUUGGGACUGG------------UACUGGGAUUc-CCG- -5'
9685 5' -52.9 NC_002577.1 + 480 0.67 0.958165
Target:  5'- -gAACCCccGACCcuaacaGACCCUAucgcGGGGUc -3'
miRNA:   3'- gaUUGGGa-CUGGua----CUGGGAU----UCCCG- -5'
9685 5' -52.9 NC_002577.1 + 1602 0.68 0.945828
Target:  5'- cCUAcCCCUG-CCA-GGCCCUAacccuacucGGGGg -3'
miRNA:   3'- -GAUuGGGACuGGUaCUGGGAU---------UCCCg -5'
9685 5' -52.9 NC_002577.1 + 1851 0.77 0.517257
Target:  5'- aUAACCCUGACCuUGACagguCCUAAccccGGGCc -3'
miRNA:   3'- gAUUGGGACUGGuACUG----GGAUU----CCCG- -5'
9685 5' -52.9 NC_002577.1 + 2050 0.72 0.777596
Target:  5'- cCUAACCCcGACCcUGACCCUAAcccugccccuaaaGGCc -3'
miRNA:   3'- -GAUUGGGaCUGGuACUGGGAUUc------------CCG- -5'
9685 5' -52.9 NC_002577.1 + 2126 0.68 0.936398
Target:  5'- cCUAACCCcGACCccGAcacuacCCCUAAaGGCc -3'
miRNA:   3'- -GAUUGGGaCUGGuaCU------GGGAUUcCCG- -5'
9685 5' -52.9 NC_002577.1 + 2364 0.69 0.909123
Target:  5'- -cGACCC-GACCccuaaacgccuccccUGcCCCUAAGGGCc -3'
miRNA:   3'- gaUUGGGaCUGGu--------------ACuGGGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 2461 1.11 0.004205
Target:  5'- cCUAACCCUGACCAUGACCCUAAGGGCc -3'
miRNA:   3'- -GAUUGGGACUGGUACUGGGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 9332 0.67 0.95429
Target:  5'- gCUGGCCCggGGCgCG-GACgcggUCUGAGGGCu -3'
miRNA:   3'- -GAUUGGGa-CUG-GUaCUG----GGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 10556 0.67 0.968424
Target:  5'- -cGACCCgcGACCGUGuuCCgcGAGcGGCg -3'
miRNA:   3'- gaUUGGGa-CUGGUACugGGa-UUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 41909 0.71 0.835007
Target:  5'- gCUGACCUcugcucucgUGGCCGUcuggaGACCCaccAGGGCg -3'
miRNA:   3'- -GAUUGGG---------ACUGGUA-----CUGGGau-UCCCG- -5'
9685 5' -52.9 NC_002577.1 + 42011 0.7 0.859362
Target:  5'- -aAGCCCUGucuucguggauuACCAUGGCUCUGcaucuAGGGg -3'
miRNA:   3'- gaUUGGGAC------------UGGUACUGGGAU-----UCCCg -5'
9685 5' -52.9 NC_002577.1 + 71664 0.66 0.981329
Target:  5'- aUGGCUUcuAUCGUGGCCUUGGGcGGCa -3'
miRNA:   3'- gAUUGGGacUGGUACUGGGAUUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 84136 0.66 0.971407
Target:  5'- uUGGCCUaugUGGCCAUGACCgUGuGGa- -3'
miRNA:   3'- gAUUGGG---ACUGGUACUGGgAUuCCcg -5'
9685 5' -52.9 NC_002577.1 + 123058 0.67 0.968424
Target:  5'- -cGACCCgcGACCGUGuuCCgcGAGcGGCg -3'
miRNA:   3'- gaUUGGGa-CUGGUACugGGa-UUC-CCG- -5'
9685 5' -52.9 NC_002577.1 + 124282 0.67 0.95429
Target:  5'- gCUGGCCCggGGCgCG-GACgcggUCUGAGGGCu -3'
miRNA:   3'- -GAUUGGGa-CUG-GUaCUG----GGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 131153 1.11 0.004205
Target:  5'- cCUAACCCUGACCAUGACCCUAAGGGCc -3'
miRNA:   3'- -GAUUGGGACUGGUACUGGGAUUCCCG- -5'
9685 5' -52.9 NC_002577.1 + 131250 0.69 0.909123
Target:  5'- -cGACCC-GACCccuaaacgccuccccUGcCCCUAAGGGCc -3'
miRNA:   3'- gaUUGGGaCUGGu--------------ACuGGGAUUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.