Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9686 | 5' | -58.4 | NC_002577.1 | + | 11120 | 0.7 | 0.603052 |
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Target: 5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3' miRNA: 3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 101240 | 0.72 | 0.534502 |
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Target: 5'- uGCCGGAaucGCCAauCCCGUCGUAGaAGCa- -3' miRNA: 3'- -CGGCCU---UGGUc-GGGUAGCGUC-UCGcc -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 43388 | 0.73 | 0.468903 |
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Target: 5'- gGCCauguuCCAGCCCGUCGgGGAGCa- -3' miRNA: 3'- -CGGccuu-GGUCGGGUAGCgUCUCGcc -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 105952 | 0.73 | 0.442065 |
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Target: 5'- cGCUGGGaagGCCGGCCCGUCGUguGGCcauGGg -3' miRNA: 3'- -CGGCCU---UGGUCGGGUAGCGucUCG---CC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 136789 | 0.73 | 0.433313 |
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Target: 5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3' miRNA: 3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 53377 | 0.73 | 0.433313 |
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Target: 5'- aGCaCGGGuACU--CCCGUCGCAGAGUGGc -3' miRNA: 3'- -CG-GCCU-UGGucGGGUAGCGUCUCGCC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 160548 | 0.73 | 0.433313 |
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Target: 5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3' miRNA: 3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 130972 | 1.12 | 0.001227 |
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Target: 5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3' miRNA: 3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5' |
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| 9686 | 5' | -58.4 | NC_002577.1 | + | 2642 | 1.12 | 0.001227 |
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Target: 5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3' miRNA: 3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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