Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9686 | 5' | -58.4 | NC_002577.1 | + | 11700 | 0.7 | 0.603052 |
Target: 5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3' miRNA: 3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 11120 | 0.7 | 0.603052 |
Target: 5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3' miRNA: 3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 134264 | 0.69 | 0.681439 |
Target: 5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3' miRNA: 3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 141739 | 0.69 | 0.661669 |
Target: 5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3' miRNA: 3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 31922 | 0.69 | 0.692252 |
Target: 5'- uGCCGGcuCCuacGCCCAUCGCGaAGUa- -3' miRNA: 3'- -CGGCCuuGGu--CGGGUAGCGUcUCGcc -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 91765 | 0.68 | 0.721416 |
Target: 5'- aCCGuAGCCAGCCgCAcggCGCgucuaAGGGCGGa -3' miRNA: 3'- cGGCcUUGGUCGG-GUa--GCG-----UCUCGCC- -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 126068 | 0.68 | 0.721416 |
Target: 5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3' miRNA: 3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 161470 | 0.68 | 0.749929 |
Target: 5'- aUCGGGgcgGCCAGgCCAUCGgaCGGAGCa- -3' miRNA: 3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5' |
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9686 | 5' | -58.4 | NC_002577.1 | + | 10102 | 0.66 | 0.860502 |
Target: 5'- cGCCGcGAcGCCgcGGCCCGUCcauGUGGuaauGCGGg -3' miRNA: 3'- -CGGC-CU-UGG--UCGGGUAG---CGUCu---CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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