Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 80358 | 0.66 | 0.990589 |
Target: 5'- -gCUCUU-CACGCAGCGgGGAGGGu- -3' miRNA: 3'- ugGAGAGuGUGUGUCGUgUUUCCUgc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 117267 | 0.66 | 0.990589 |
Target: 5'- uACCUacaCACuCACGGCACGugguacguGGACGu -3' miRNA: 3'- -UGGAga-GUGuGUGUCGUGUuu------CCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 97527 | 0.66 | 0.990589 |
Target: 5'- cGCCUCggUCGCGCGCgucucccgcccAGCAC---GGACGc -3' miRNA: 3'- -UGGAG--AGUGUGUG-----------UCGUGuuuCCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 45856 | 0.66 | 0.982462 |
Target: 5'- gACCg-UUAUGCGCGGCAUAuuGGGGACu -3' miRNA: 3'- -UGGagAGUGUGUGUCGUGU--UUCCUGc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 128968 | 0.66 | 0.982462 |
Target: 5'- cGCCUCgguccUUGCGCGCAGUACuuGaGACGa -3' miRNA: 3'- -UGGAG-----AGUGUGUGUCGUGuuUcCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 4646 | 0.66 | 0.982462 |
Target: 5'- cGCCUCgguccUUGCGCGCAGUACuuGaGACGa -3' miRNA: 3'- -UGGAG-----AGUGUGUGUCGUGuuUcCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 46503 | 0.67 | 0.96992 |
Target: 5'- uACCcCUUuCGCGCAGCACGAcagaAGGAa- -3' miRNA: 3'- -UGGaGAGuGUGUGUCGUGUU----UCCUgc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 132120 | 0.68 | 0.966791 |
Target: 5'- uGCg-CUCGCGCGCgAGC-CAGAcGGACGg -3' miRNA: 3'- -UGgaGAGUGUGUG-UCGuGUUU-CCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 1494 | 0.68 | 0.966791 |
Target: 5'- uGCg-CUCGCGCGCgAGC-CAGAcGGACGg -3' miRNA: 3'- -UGgaGAGUGUGUG-UCGuGUUU-CCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 62011 | 0.68 | 0.96344 |
Target: 5'- uCCUCggGCGCGCcgucgccguccuGGCAUAGGGGACc -3' miRNA: 3'- uGGAGagUGUGUG------------UCGUGUUUCCUGc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 91760 | 0.69 | 0.947694 |
Target: 5'- aGCCag-C-CGCACGGCGCGucuAAGGGCGg -3' miRNA: 3'- -UGGagaGuGUGUGUCGUGU---UUCCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 103246 | 0.69 | 0.933309 |
Target: 5'- aGCCUUUaCAUACGUAGCACAGGuGGCGg -3' miRNA: 3'- -UGGAGA-GUGUGUGUCGUGUUUcCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 72222 | 0.69 | 0.928011 |
Target: 5'- cGCUaUC-CGCGCACAGCACAucGGGuCGc -3' miRNA: 3'- -UGG-AGaGUGUGUGUCGUGUuuCCU-GC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 72934 | 0.7 | 0.916059 |
Target: 5'- cGCUUCUCGCGCAguccuucCAGCcugcCAAAGcGACGg -3' miRNA: 3'- -UGGAGAGUGUGU-------GUCGu---GUUUC-CUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 25548 | 0.7 | 0.904288 |
Target: 5'- gACCg--CACGCACGGCA--AGGGACu -3' miRNA: 3'- -UGGagaGUGUGUGUCGUguUUCCUGc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 138946 | 0.7 | 0.900384 |
Target: 5'- cGCCgauUCAgACACcuccgucagccguccGGCGCGAGGGACGa -3' miRNA: 3'- -UGGag-AGUgUGUG---------------UCGUGUUUCCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 158392 | 0.7 | 0.900384 |
Target: 5'- cGCCgauUCAgACACcuccgucagccguccGGCGCGAGGGACGa -3' miRNA: 3'- -UGGag-AGUgUGUG---------------UCGUGUUUCCUGC- -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 4110 | 0.71 | 0.861367 |
Target: 5'- gACCUCUCACACAa--CAC--AGGACa -3' miRNA: 3'- -UGGAGAGUGUGUgucGUGuuUCCUGc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 129503 | 0.71 | 0.861367 |
Target: 5'- gACCUCUCACACAa--CAC--AGGACa -3' miRNA: 3'- -UGGAGAGUGUGUgucGUGuuUCCUGc -5' |
|||||||
9689 | 5' | -51.8 | NC_002577.1 | + | 3409 | 0.73 | 0.792226 |
Target: 5'- cCUUCUCGgGCACcGCAcCGAAGGAUGg -3' miRNA: 3'- uGGAGAGUgUGUGuCGU-GUUUCCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home