Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 969 | 5' | -59 | NC_000902.1 | + | 19255 | 0.66 | 0.475358 |
|
Target: 5'- gGGaUGCCGGacauuaccggacaaCUGCuGCG-GCACCUCAa -3' miRNA: 3'- -CCaACGGUC--------------GACG-CGCgCGUGGAGUa -5' |
|||||||
| 969 | 5' | -59 | NC_000902.1 | + | 25071 | 0.67 | 0.43919 |
|
Target: 5'- aGGUugaUGCCauucuggaugAGCUGCuGgGCGCACCggCAg -3' miRNA: 3'- -CCA---ACGG----------UCGACG-CgCGCGUGGa-GUa -5' |
|||||||
| 969 | 5' | -59 | NC_000902.1 | + | 16262 | 0.67 | 0.411048 |
|
Target: 5'- cGUUGUCAuGCUugGCGUGCGUACCagCAa -3' miRNA: 3'- cCAACGGU-CGA--CGCGCGCGUGGa-GUa -5' |
|||||||
| 969 | 5' | -59 | NC_000902.1 | + | 4120 | 0.68 | 0.39292 |
|
Target: 5'- --aUGCCAGCgGCGCGCuCgGCUUCAc -3' miRNA: 3'- ccaACGGUCGaCGCGCGcG-UGGAGUa -5' |
|||||||
| 969 | 5' | -59 | NC_000902.1 | + | 49003 | 0.7 | 0.29557 |
|
Target: 5'- uGUUGCCgaugAGgUGCGCGCGCAgCUgGc -3' miRNA: 3'- cCAACGG----UCgACGCGCGCGUgGAgUa -5' |
|||||||
| 969 | 5' | -59 | NC_000902.1 | + | 49097 | 1.07 | 0.000534 |
|
Target: 5'- cGGUUGCCAGCUGCGCGCGCACCUCAUc -3' miRNA: 3'- -CCAACGGUCGACGCGCGCGUGGAGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home