Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9693 | 3' | -53 | NC_002577.1 | + | 219 | 0.66 | 0.967658 |
Target: 5'- gGCAGCCcGCGGGCuGAGugcaCCugUGGcGGCg -3' miRNA: 3'- -UGUCGGaUGUUCG-UUC----GGugAUC-CUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 133395 | 0.66 | 0.967658 |
Target: 5'- gGCAGCCcGCGGGCuGAGugcaCCugUGGcGGCg -3' miRNA: 3'- -UGUCGGaUGUUCG-UUC----GGugAUC-CUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 11066 | 0.66 | 0.967658 |
Target: 5'- cUAGCCccCGGcGCGGGCCGCggccGGACa -3' miRNA: 3'- uGUCGGauGUU-CGUUCGGUGau--CCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 78781 | 0.66 | 0.967658 |
Target: 5'- -gGGCCU-CAGGCuuAGGCCGg-AGGGCu -3' miRNA: 3'- ugUCGGAuGUUCG--UUCGGUgaUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 122547 | 0.66 | 0.967658 |
Target: 5'- cUAGCCccCGGcGCGGGCCGCggccGGACa -3' miRNA: 3'- uGUCGGauGUU-CGUUCGGUGau--CCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 122425 | 0.66 | 0.96434 |
Target: 5'- cCGGCCUACAAauacGCGAGCgGagguccggcgGGGACc -3' miRNA: 3'- uGUCGGAUGUU----CGUUCGgUga--------UCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 11189 | 0.66 | 0.96434 |
Target: 5'- cCGGCCUACAAauacGCGAGCgGagguccggcgGGGACc -3' miRNA: 3'- uGUCGGAUGUU----CGUUCGgUga--------UCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 129976 | 0.66 | 0.963996 |
Target: 5'- gGCGGaCUGCAGGCGaagaaguAGCCgggcgcgaagcgGCUGGGAa -3' miRNA: 3'- -UGUCgGAUGUUCGU-------UCGG------------UGAUCCUg -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 63586 | 0.66 | 0.957005 |
Target: 5'- -aGGCUaUGCGAGCAGGCCccauCcGGGAUa -3' miRNA: 3'- ugUCGG-AUGUUCGUUCGGu---GaUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 118669 | 0.66 | 0.952976 |
Target: 5'- uACAGCUUACuAGCGcaaGGCUg--AGGACa -3' miRNA: 3'- -UGUCGGAUGuUCGU---UCGGugaUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 85545 | 0.67 | 0.944176 |
Target: 5'- cCAGCgaauuCUGCAGGCGAGCCAaucuGGCa -3' miRNA: 3'- uGUCG-----GAUGUUCGUUCGGUgaucCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 162280 | 0.67 | 0.944176 |
Target: 5'- aACAGCCggaacGCAAcCGAGCCGC-GGGGu -3' miRNA: 3'- -UGUCGGa----UGUUcGUUCGGUGaUCCUg -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 3637 | 0.67 | 0.94371 |
Target: 5'- gGCGGaCUGCAGGCGaagaaguAGCCgggcgcgaagcgGCUGGGAUc -3' miRNA: 3'- -UGUCgGAUGUUCGU-------UCGG------------UGAUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 140780 | 0.67 | 0.939398 |
Target: 5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3' miRNA: 3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 156557 | 0.67 | 0.939398 |
Target: 5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3' miRNA: 3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 81149 | 0.67 | 0.934365 |
Target: 5'- -uGGCCUGCGGGUAgaucGGCCAUUauucccguagaGGGAg -3' miRNA: 3'- ugUCGGAUGUUCGU----UCGGUGA-----------UCCUg -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 55565 | 0.67 | 0.934365 |
Target: 5'- cGCuGCCgcc--GCAGcGCUACUGGGACg -3' miRNA: 3'- -UGuCGGauguuCGUU-CGGUGAUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 54506 | 0.68 | 0.923526 |
Target: 5'- uGCAGCaaaGCAuGGCGAGCUuugcCUGGGAUg -3' miRNA: 3'- -UGUCGga-UGU-UCGUUCGGu---GAUCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 160581 | 0.68 | 0.917721 |
Target: 5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3' miRNA: 3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5' |
|||||||
9693 | 3' | -53 | NC_002577.1 | + | 136756 | 0.68 | 0.917721 |
Target: 5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3' miRNA: 3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home